Factsheet for Solyc12g096190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075555	Potato	plastid	88.41	88.41
CDY63316	Canola	cytosol	65.85	83.94
CDX99679	Canola	cytosol	18.09	80.91
Zm00001d046676_P001	Maize	extracellular	60.57	79.89
VIT_14s0083g00460.t01	Wine grape	plastid	80.08	79.6
Bra028413.1-P	Field mustard	plastid	78.66	77.4
CDX74518	Canola	plastid	78.66	77.4
CDY01654	Canola	plastid	78.66	77.25
Bra028191.1-P	Field mustard	plastid	78.46	77.2
KRH18295	Soybean	nucleus, plastid	78.05	76.49
CDX67409	Canola	plastid	73.78	76.1
CDY30314	Canola	plastid	73.58	75.89
CDY50576	Canola	plastid	73.58	75.89
AT5G38530.1	Thale cress	plastid	77.64	75.49
KRG93806	Soybean	cytosol	36.38	74.9
GSMUA_Achr2P05390_001	Banana	plastid	75.61	74.25
CDY52465	Canola	plastid	75.41	74.2
CDX99680	Canola	plastid	75.41	74.2
Bra025430.1-P	Field mustard	plastid	72.97	72.67
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	71.75	72.48
TraesCS7A01G392800.1	Wheat	plastid	71.34	72.07
KXG20416	Sorghum	plastid	72.36	72.06
HORVU7Hr1G092800.3	Barley	plastid	71.54	71.84
TraesCS7D01G388400.3	Wheat	cytosol	71.34	71.2
Os06t0632200-02	Rice	plastid	70.12	70.84
TraesCS2A01G257700.1	Wheat	nucleus	10.77	51.46
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	5.69	28.0
Solyc10g018380.1.1	Tomato	cytosol	10.57	24.88
Solyc07g064280.2.1	Tomato	plastid	22.56	24.34
Solyc10g006400.2.1	Tomato	plastid	22.56	23.72
Solyc10g018390.1.1	Tomato	cytosol	20.12	21.76
Solyc10g005320.2.1	Tomato	plastid	19.31	20.65

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0004834	GO:GO:0005488	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0030170	UniProt:K4DH92	HAMAP:MF_00133	PFAM:PF00291
PIRSF:PIRSF001413	PIRSF:PIRSF500824	InterPro:PLP-dep	PANTHER:PTHR43565	SUPFAM:SSF53686	EnsemblPlantsGene:Solyc12g096190.1
EnsemblPlants:Solyc12g096190.1.1	TIGRFAMs:TIGR01415	InterPro:Trp_synth_b-like	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI0002769BA6	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:65212570..65215409

Molecular Weight (calculated)

54093.3 Da

IEP (calculated)

7.325

GRAVY (calculated)

-0.180

Length

492 amino acids

Sequence
(BLAST)

001: MAVSLPNLFP KGDAYGTKYF EIKTKPSQLK LSFSYRARAK AALNPRSSSV EIPRQWYNLV ADLPIKPPPP LHPKTFQPIK PEDLSPLFCD ELIKQEASID
101: QFIDIPEEVL DVYSLWRPTP LIRAKRLEKL LDTPARIYYK YEGGSPAGSH KPNSAVPQAW YNKMGNVKNV VTETGAGQWG SALSFACSLF GLNCEVWQVR
201: ASFDQKPYRK MMMQTWGAKV HPSPSDLTEA GRAILQMDPS SPGSLGIAIS EAVEVAAKNA DTKYCLGSVL NHVLLHQTVI GEECIKQMED FGETPDVIIG
301: CTGGGSNFAG LAFPFIREKL KGRINPLIRA VEPTACPSLT KGVYAYDYGD TAGMTPLMKM HTLGHDFIPD PIHSGGLRYH GMAPLISHVY ELGFMEAISI
401: PQIECFQGAI QFARSEGLIP APEPTHAIAA TIREALRCKE TGESKVILMA MCGHGHFDLS SYDKYLQGSM VDLSFSEEKI KASLAKIPQP VS

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.