Factsheet for Solyc10g005320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029363	Potato	plastid	82.61	82.79
Solyc10g018390.1.1	Tomato	cytosol	74.35	75.16
CDY72593	Canola	cytosol, plastid	42.83	73.78
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	15.43	71.0
Solyc10g018380.1.1	Tomato	cytosol	30.0	66.03
VIT_10s0116g00710.t01	Wine grape	plastid	66.09	63.73
CDY21004	Canola	mitochondrion	44.35	60.71
Bra016829.1-P	Field mustard	plastid	59.78	59.27
KRH27603	Soybean	mitochondrion	59.35	59.09
CDY30322	Canola	plastid	56.09	58.5
AT5G28237.1	Thale cress	mitochondrion	59.13	58.49
Bra037230.1-P	Field mustard	plastid	55.87	58.28
CDY49790	Canola	mitochondrion	58.7	57.94
Solyc07g064280.2.1	Tomato	plastid	54.13	54.61
CDY05419	Canola	cytosol	11.09	53.68
Solyc10g006400.2.1	Tomato	plastid	54.35	53.42
Bra016830.1-P	Field mustard	plastid	52.17	53.1
CDY57048	Canola	cytosol	12.83	46.83
Solyc12g096190.1.1	Tomato	plastid	20.65	19.31
HORVU4Hr1G035330.1	Barley	plastid	5.22	17.65

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:50.4.2	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0004834	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073
GO:GO:0009987	GO:GO:0016829	UniProt:K4CX65	HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413
InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF2	SUPFAM:SSF53686	EnsemblPlantsGene:Solyc10g005320.2
EnsemblPlants:Solyc10g005320.2.1	TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI000276C757	:	:	:	:	:

Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:K4CX65]

Coordinates

chr10:+:234474..236768

Molecular Weight (calculated)

50046.4 Da

IEP (calculated)

7.564

GRAVY (calculated)

-0.127

Length

460 amino acids

Sequence
(BLAST)

001: MACNINVESI LGQGIFATTS SKKLQAFPSH HTYKANVISC VAIGPTPIPQ LPWKLVFHEK ERQSLLSNEK FGIYGGKFVP ETLISPLTKL DYEFNSALRD
101: PQFQMNLQVA LKDYVGRETP LYFAQRLTDY YKSLNKGIGP DIYLKREDLN HGGAHKINNA IAQAMLAKRM GCKNVVASTG AGQHGVATAA ACAKLSLECT
201: IFMGSLDMER QPSNVLLMNH LGAKVKCVEG SFKDAMSEGI RNWVNNLETS YFLAGAAIGP HPCPTMVREF QSIIGKETRK QAMDKWGGKP HVLVACVGSG
301: SNALGLFHEF IQDVDVRLIG VEAGGIGLDS GKHSATMARG EVGVYHGAMS YLLQDEEGQI IGPHSIGVGL EYPGVSPELS YLKDIGRAEF STVTDEEAIK
401: AYKRLCILEG IFPALESCHA LAFLDKLCST LKDGEKVIVN LSGRGDKDAE AVFNHTPKHK

Best Arabidopsis Sequence Match ( AT5G28237.1 )
(BLAST)

001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC
101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL
201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV
301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE
401: AIQACMRLSR LEGIIPALEA SHALAFLDKL VPTLRDGAKV VVNCSGRGDK DLDTLIQRGM PSSFC

Arabidopsis Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F4K727]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.