Factsheet for HORVU4Hr1G035330.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074916	Potato	cytosol	8.09	11.11
CDY72593	Canola	cytosol, plastid	18.38	9.36
CDY21004	Canola	mitochondrion	17.65	7.14
Bra037230.1-P	Field mustard	plastid	22.06	6.8
CDY30322	Canola	plastid	21.32	6.58
Solyc10g018380.1.1	Tomato	cytosol	9.56	6.22
CDY49790	Canola	mitochondrion	20.59	6.01
VIT_10s0116g00710.t01	Wine grape	plastid	20.59	5.87
Bra016829.1-P	Field mustard	plastid	19.85	5.82
AT5G28237.1	Thale cress	mitochondrion	19.85	5.81
HORVU7Hr1G073460.3	Barley	plastid	21.32	5.74
Bra016830.1-P	Field mustard	plastid	18.38	5.53
CDY05419	Canola	cytosol	3.68	5.26
PGSC0003DMT400029363	Potato	plastid	17.65	5.23
Solyc10g005320.2.1	Tomato	plastid	17.65	5.22
KRH27603	Soybean	mitochondrion	17.65	5.19
Solyc10g018390.1.1	Tomato	cytosol	16.91	5.05
HORVU7Hr1G092800.3	Barley	plastid	13.97	3.88
CDY57048	Canola	cytosol	2.94	3.17
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	2.21	3.0

Protein Annotations

EnsemblPlants:HORVU4Hr1G035330.1	EnsemblPlantsGene:HORVU4Hr1G035330	Gene3D:3.40.50.1100	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824
GO:GO:0004834	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030170	InterPro:Trp_synth_b-like	KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	PANTHER:PTHR43565	UniParc:UPI000B475969
UniProt:A0A287NSU3	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:259845803..259847035

Molecular Weight (calculated)

15579.0 Da

IEP (calculated)

10.948

GRAVY (calculated)

-0.542

Length

136 amino acids

Sequence
(BLAST)

001: MEEGARGRKP SSPRHARGRR SSPKQHRLPC VSIRWICLKN NVVAANGRRS FAATVGSYPG NVGVPKQWYN LIADLSVKPP PMLHPRTHEP LNTRDLAPLF
101: PDVLIRQELM EERFIGIPDE LRDVYELWRP TPLIIR

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.