CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72593	Canola	cytosol, plastid	40.69	70.41
PGSC0003DMT400029363	Potato	plastid	59.31	59.7
Solyc10g005320.2.1	Tomato	plastid	59.09	59.35
Bra016829.1-P	Field mustard	plastid	59.31	59.05
VIT_10s0116g00710.t01	Wine grape	plastid	60.82	58.91
CDY21004	Canola	mitochondrion	42.64	58.63
KRH37954	Soybean	cytosol	19.48	58.44
CDY49790	Canola	mitochondrion	58.87	58.37
AT5G28237.1	Thale cress	mitochondrion	58.44	58.06
Solyc10g018390.1.1	Tomato	cytosol	57.14	58.02
CDY05419	Canola	cytosol	11.9	57.89
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	12.34	57.0
Bra037230.1-P	Field mustard	plastid	53.68	56.24
CDY30322	Canola	plastid	53.46	56.01
Bra016830.1-P	Field mustard	plastid	54.11	55.31
KRG98855	Soybean	mitochondrion, plastid	52.16	51.17
Solyc10g018380.1.1	Tomato	cytosol	22.94	50.72
KRH46102	Soybean	nucleus, plastid	51.95	50.1
PGSC0003DMT400074916	Potato	cytosol	10.39	48.48
CDY57048	Canola	cytosol	12.12	44.44
KRG93806	Soybean	cytosol	11.47	22.18
KRH18295	Soybean	nucleus, plastid	21.0	19.32
HORVU4Hr1G035330.1	Barley	plastid	5.19	17.65

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:50.4.2	EMBL:ACUP02006730	EnsemblPlantsGene:GLYMA_11G003500
GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009073	GO:GO:0009987	GO:GO:0016829	UniProt:I1LFR5	EnsemblPlants:KRH27603
ProteinID:KRH27603	ProteinID:KRH27603.1	HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413	InterPro:PLP-dep
ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF2	SUPFAM:SSF53686	TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS
InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI00023CD34D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:+:260784..263805

Molecular Weight (calculated)

49861.6 Da

IEP (calculated)

7.430

GRAVY (calculated)

-0.184

Length

462 amino acids

Sequence
(BLAST)

001: MMANKLQGAI VSCHSRTRQL SIDEKGRAIS AVLTTHQEPF KTKVPELTIS HVPPPTPSIK NKDFIIPSTT SGKFGRFGGK FVPETLVASL TQLEAEFKNA
101: LRDHAFQAEL AEALRDYAGR ETPLYHAKRL SEYYKSVNNG KGPDIYLKRE DLNHSGSHKM NNALAQAMIA KRMGCKSVVT ATGSGQHGLA TAAACAKLAL
201: DCTVFMADKD IHRQYSNVRL IKLLGAQVEA VDGGFTDAAS EAFRYWVGDL ENRYHLSGSA VGPHPCPTMV REFQSVIGKE TRMQALEKWG GKPDVLVASV
301: GTGSNALGLF HEFIADKDVR FVGVEAGGLG LESGKHSSTL TTGEVGAYHG AISYLLQDQD GQIIHPHSIA AGMEYPGVGP ELSFLKESGR AEFCVANDEE
401: ALDAYQRLCK LEGIFPSLEA AHALAILDKL VPTLCNGTKV VVNCSGRGDK DAAIVFNRGI YI

Best Arabidopsis Sequence Match ( AT5G28237.1 )
(BLAST)

001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC
101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL
201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV
301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE
401: AIQACMRLSR LEGIIPALEA SHALAFLDKL VPTLRDGAKV VVNCSGRGDK DLDTLIQRGM PSSFC

Arabidopsis Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F4K727]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.