Factsheet for Bra037230.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30322	Canola	plastid	92.06	92.06
Bra016829.1-P	Field mustard	plastid	75.28	71.55
Bra016830.1-P	Field mustard	plastid	67.57	65.93
PGSC0003DMT400029363	Potato	plastid	59.64	57.3
VIT_10s0116g00710.t01	Wine grape	plastid	61.9	57.23
Solyc10g005320.2.1	Tomato	plastid	58.28	55.87
Bra026381.1-P	Field mustard	cytosol	12.47	54.46
Solyc10g018390.1.1	Tomato	cytosol	55.78	54.07
KRH27603	Soybean	mitochondrion	56.24	53.68
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	12.02	53.0
Bra019075.1-P	Field mustard	plastid	55.33	51.69
Bra002954.1-P	Field mustard	plastid	54.42	51.61
Solyc10g018380.1.1	Tomato	cytosol	24.26	51.2
PGSC0003DMT400074916	Potato	cytosol	10.88	48.48
HORVU4Hr1G035330.1	Barley	plastid	6.8	22.06
Bra028413.1-P	Field mustard	plastid	24.72	21.8
Bra028191.1-P	Field mustard	plastid	24.26	21.4
Bra025430.1-P	Field mustard	plastid	23.13	20.65

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:50.4.2	EnsemblPlantsGene:Bra037230	EnsemblPlants:Bra037230.1
EnsemblPlants:Bra037230.1-P	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0006568
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009987
GO:GO:0016829	UniProt:M4F819	HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413	InterPro:PLP-dep
ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF2	SUPFAM:SSF53686	TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS
InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0002541ED1	SEG:seg	:

Description

AT5G28237 (E=3e-186) | tryptophan synthase, beta subunit, putative

Coordinates

chrA09:+:4876418..4882256

Molecular Weight (calculated)

46931.2 Da

IEP (calculated)

7.761

GRAVY (calculated)

-0.099

Length

441 amino acids

Sequence
(BLAST)

001: MCWDAELHQG GVSRPKRRPS PSPSHQVASP LLQGIPVTVS VQQQRLSGKI GASGTSKGQA GAVDVSKAAA LLFFFTRVLT DEELTTALRD YAGRETPLYF
101: AGRLTEHYKS ISRTTGDGPE IYLKREDLSH CGSHKINNAL AQAMIARRLG CSRVVAATGA GQHGVATAAA CAKFSLECTV FMGTADKEKQ FSNVLSMKML
201: GAQVKSVEGT FKDASSEAIR NWVGNLKTTY YLSGTVVGPH PSPLMVREFQ SLIGKETRRQ ANQLWGGKPD VLVACVGSGS NALGLFHEFV GDEDVRLVGV
301: EAAGLGLDSG KLSATLAVGD VGVYHGSMSY LLQDDEGQIL KPHSVGVGLE YPGVGPEISF LKEAGRAEFY TATDQEAIQA CRLLSRLEGI IPALEPSHAL
401: AFLDKLVPTL RDGAKVVVNC SGRGDKDLDT LIQRGLPSSL C

Best Arabidopsis Sequence Match ( AT5G28237.1 )
(BLAST)

001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC
101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL
201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV
301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE
401: AIQACMRLSR LEGIIPALEA SHALAFLDKL VPTLRDGAKV VVNCSGRGDK DLDTLIQRGM PSSFC

Arabidopsis Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F4K727]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.