Factsheet for Bra002954.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002954.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	Bra002954.1-P	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17275	Canola	plastid	99.78	99.78
Bra019075.1-P	Field mustard	plastid	90.54	89.19
AT5G54810.1	Thale cress	plastid	88.6	87.66
Zm00001d049610_P001	Maize	plastid	79.14	77.64
TraesCS7A01G308600.1	Wheat	plastid	77.85	77.02
TraesCS7D01G305300.1	Wheat	plastid	77.85	77.02
TraesCS7B01G208700.1	Wheat	plastid	77.63	76.81
EES13315	Sorghum	plastid	78.28	76.47
Zm00001d024702_P001	Maize	plastid	78.28	75.99
Os08t0135900-01	Rice	plastid	75.7	74.73
Bra026381.1-P	Field mustard	cytosol	16.13	74.26
HORVU7Hr1G073460.3	Barley	plastid	77.63	71.49
Bra016829.1-P	Field mustard	plastid	56.34	56.47
Bra037230.1-P	Field mustard	plastid	51.61	54.42
Bra016830.1-P	Field mustard	plastid	51.18	52.65
Bra028413.1-P	Field mustard	plastid	23.87	22.2
Bra028191.1-P	Field mustard	plastid	23.44	21.8
Bra025430.1-P	Field mustard	plastid	22.8	21.46

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2	EnsemblPlantsGene:Bra002954	EnsemblPlants:Bra002954.1
EnsemblPlants:Bra002954.1-P	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886
GO:GO:0006568	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009073	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628
GO:GO:0009651	GO:GO:0009987	GO:GO:0016020	GO:GO:0016829	GO:GO:0019904	UniProt:M4CFH2
HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413	InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882
PANTHER:PTHR42882:SF3	SUPFAM:SSF53686	TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI00025440C3	SEG:seg	:	:	:

Description

AT5G54810 (E=1e-250) TSB1, TRPB, TRP2, ATTSB1 | TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1); tryptophan synthase

Coordinates

chrA10:-:6533539..6535376

Molecular Weight (calculated)

50507.2 Da

IEP (calculated)

6.905

GRAVY (calculated)

-0.211

Length

465 amino acids

Sequence
(BLAST)

001: MAASGTVASF RTSVSSSPQL THLRSPSKAL KFTPLPSSRS RPSFSVSCTI AKDPPVLMSA GSDPSLWQRP DSFGRFGKFG GKYVPETLMH ALSELETAFH
101: SLATDDDFQR ELAGILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV ATATVCARFG
201: LECIIYMGAQ DMERQALNVF RMRLLGAEVR AVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRRQAL EKWGGKPDVL
301: VACVGGGSNA MGLFHEFVND TEVRLIGVEA AGFGVDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK DMGRAEYFSV
401: TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GSRVVLNFSG RGDKDVQTVA KYLEV

Best Arabidopsis Sequence Match ( AT5G54810.1 )
(BLAST)

001: MAASGTSATF RASVSSAPSS SSQLTHLKSP FKAVKYTPLP SSRSKSSSFS VSCTIAKDPP VLMAAGSDPA LWQRPDSFGR FGKFGGKYVP ETLMHALSEL
101: ESAFYALATD DDFQRELAGI LKDYVGRESP LYFAERLTEH YRRENGEGPL IYLKREDLNH TGAHKINNAV AQALLAKRLG KKRIIAETGA GQHGVATATV
201: CARFGLECII YMGAQDMERQ ALNVFRMRLL GAEVRGVHSG TATLKDATSE AIRDWVTNVE TTHYILGSVA GPHPYPMMVR DFHAVIGKET RKQALEKWGG
301: KPDVLVACVG GGSNAMGLFH EFVNDTEVRM IGVEAAGFGL DSGKHAATLT KGDVGVLHGA MSYLLQDDDG QIIEPHSISA GLDYPGVGPE HSFFKDMGRA
401: EYYSITDEEA LEAFKRVSRL EGIIPALETS HALAYLEKLC PTLSDGTRVV LNFSGRGDKD VQTVAKYLDV

Arabidopsis Description

TSB1Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.