Factsheet for Zm00001d049610_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d024702_P001
Zm00001d049610_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	Zm00001d024702_P001	AT5G54810.1	21798944
AT5G54810.1	Zm00001d049610_P001	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024702_P001	Maize	plastid	87.34	86.43
EES13315	Sorghum	plastid	86.5	86.13
TraesCS7B01G208700.1	Wheat	plastid	85.23	85.96
PGSC0003DMT400037303	Potato	cytosol	74.26	85.85
TraesCS7D01G305300.1	Wheat	plastid	85.02	85.74
TraesCS7A01G308600.1	Wheat	plastid	85.02	85.74
CDY55463	Canola	cytosol	52.32	82.94
CDX82609	Canola	cytosol	52.32	82.94
Os08t0135900-01	Rice	plastid	82.28	82.8
GSMUA_Achr4P07140_001	Banana	mitochondrion	73.0	80.28
HORVU7Hr1G073460.3	Barley	plastid	84.6	79.41
CDY17275	Canola	plastid	77.64	79.14
Bra002954.1-P	Field mustard	plastid	77.64	79.14
VIT_19s0177g00310.t01	Wine grape	plastid	76.37	79.04
CDY19860	Canola	plastid	77.43	78.92
PGSC0003DMT400002722	Potato	plastid	75.53	78.51
Solyc07g064280.2.1	Tomato	plastid	75.53	78.51
CDX92783	Canola	plastid	77.0	77.33
Bra019075.1-P	Field mustard	plastid	76.79	77.12
CDY46668	Canola	plastid	76.79	77.12
AT5G54810.1	Thale cress	plastid	76.37	77.02
AT4G27070.1	Thale cress	plastid	76.37	76.21
Solyc10g006400.2.1	Tomato	plastid	75.11	76.07
KRH37954	Soybean	cytosol	24.68	75.97
KRG98855	Soybean	mitochondrion, plastid	74.47	74.95
KRH46102	Soybean	nucleus, plastid	74.68	73.9
CDY53670	Canola	cytosol	16.88	67.8
CDY56040	Canola	plastid	35.44	55.08
Zm00001d046676_P001	Maize	extracellular	22.36	28.42

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2	ProteinID:AQK50904.1	GO:GO:0000162
GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009073	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016829	UniProt:K7TTR0
HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413	InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882
PANTHER:PTHR42882:SF3	SUPFAM:SSF53686	TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000220B885	EnsemblPlantsGene:Zm00001d049610	EnsemblPlants:Zm00001d049610_P001	EnsemblPlants:Zm00001d049610_T001	SEG:seg

Description

orange pericarp1Tryptophan synthase beta chain 1

Coordinates

chr4:-:37573636..37577238

Molecular Weight (calculated)

50701.5 Da

IEP (calculated)

7.052

GRAVY (calculated)

-0.200

Length

474 amino acids

Sequence
(BLAST)

001: MAAAIRGSPT RAAAPTQPRA VLRVASSAAP ASSSSARPRR GAVAEAAMQP AKAVAAEAAS PAAALEMGNG AAVAGLQRPD AMGRFGRFGG KYVPETLMHA
101: LTELENAFHA LATDDEFQKE LDGILKDYVG RESPLYFAER LTEHYKRADG TGPLIYLKRE DLNHTGAHKI NNAVAQALLA KRLGKQRIIA ETGAGQHGVA
201: TATVCARFGL QCIIYMGAQD MERQALNVFR MKLLGAEVRA VHSGTATLKD ATSEAIRDWV TNVETTHYIL GSVAGPHPYP MMVREFHKVI GKETRRQAMH
301: KWGGKPDVLV ACVGGGSNAM GLFHEFVEDQ DVRLIGVEAA GHGVDTDKHA ATLTKGQVGV LHGSMSYLLQ DDDGQVIEPH SISAGLDYPG VGPEHSFLKD
401: IGRAEYDSVT DQEALDAFKR VSRLEGIIPA LETSHALAYL EKLCPTLPDG VRVVLNCSGR GDKDVHTASK YLDV

Best Arabidopsis Sequence Match ( AT5G54810.1 )
(BLAST)

001: MAASGTSATF RASVSSAPSS SSQLTHLKSP FKAVKYTPLP SSRSKSSSFS VSCTIAKDPP VLMAAGSDPA LWQRPDSFGR FGKFGGKYVP ETLMHALSEL
101: ESAFYALATD DDFQRELAGI LKDYVGRESP LYFAERLTEH YRRENGEGPL IYLKREDLNH TGAHKINNAV AQALLAKRLG KKRIIAETGA GQHGVATATV
201: CARFGLECII YMGAQDMERQ ALNVFRMRLL GAEVRGVHSG TATLKDATSE AIRDWVTNVE TTHYILGSVA GPHPYPMMVR DFHAVIGKET RKQALEKWGG
301: KPDVLVACVG GGSNAMGLFH EFVNDTEVRM IGVEAAGFGL DSGKHAATLT KGDVGVLHGA MSYLLQDDDG QIIEPHSISA GLDYPGVGPE HSFFKDMGRA
401: EYYSITDEEA LEAFKRVSRL EGIIPALETS HALAYLEKLC PTLSDGTRVV LNFSGRGDKD VQTVAKYLDV

Arabidopsis Description

TSB1Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.