Factsheet for PGSC0003DMT400037303

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002722
PGSC0003DMT400037303

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	PGSC0003DMT400002722	AT5G54810.1	21798944
AT5G54810.1	PGSC0003DMT400037303	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g006400.2.1	Tomato	plastid	99.02	86.75
KRH37954	Soybean	cytosol	31.95	85.06
PGSC0003DMT400002722	Potato	plastid	94.15	84.65
GSMUA_Achr4P07140_001	Banana	mitochondrion	86.83	82.6
VIT_19s0177g00310.t01	Wine grape	plastid	89.76	80.35
AT5G54810.1	Thale cress	plastid	90.0	78.51
KRG98855	Soybean	mitochondrion, plastid	89.76	78.13
AT4G27070.1	Thale cress	plastid	90.0	77.68
KRH46102	Soybean	nucleus, plastid	90.0	77.04
TraesCS7A01G308600.1	Wheat	plastid	85.85	74.89
TraesCS7D01G305300.1	Wheat	plastid	85.85	74.89
TraesCS7B01G208700.1	Wheat	plastid	85.61	74.68
EES13315	Sorghum	plastid	86.59	74.58
Zm00001d049610_P001	Maize	plastid	85.85	74.26
Os08t0135900-01	Rice	plastid	84.39	73.46
Bra026381.1-P	Field mustard	cytosol	18.05	73.27
Zm00001d024702_P001	Maize	plastid	85.12	72.86
CDX89281	Canola	cytosol	17.8	72.28
HORVU7Hr1G073460.3	Barley	plastid	86.34	70.1
PGSC0003DMT400029363	Potato	plastid	60.73	54.25
PGSC0003DMT400074916	Potato	cytosol	11.95	49.49
PGSC0003DMT400075555	Potato	plastid	26.34	21.95

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0004834	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009073	GO:GO:0009987	GO:GO:0016829	UniProt:M1B556	HAMAP:MF_00133
PFAM:PF00291	EnsemblPlantsGene:PGSC0003DMG401014396	PGSC:PGSC0003DMG401014396	EnsemblPlants:PGSC0003DMT400037303	PIRSF:PIRSF001413	InterPro:PLP-dep
ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	SUPFAM:SSF53686	TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS
InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0002952D9F	:	:

Description

Tryptophan synthase beta subunit [Source:PGSC_GENE;Acc:PGSC0003DMG401014396]

Coordinates

chr10:+:1314967..1319374

Molecular Weight (calculated)

44720.5 Da

IEP (calculated)

6.350

GRAVY (calculated)

-0.218

Length

410 amino acids

Sequence
(BLAST)

001: MAAQAVDEPA AIQRPDSFGR FGKFGGKYVP ETLMHALDEL ETAFKSLATD EAFQKELDGI LRDYVGRESP LYFAERLTEH YKRPNGEGPL IYLKREDLNH
101: TGAHKINNAV AQALLAKRLG KKRIIAETGA GQHGVATATV CARFGLECII YMGAQDMERQ ALNVFRMRLL GAEVRAVHSG TATLKDATSE AIRDWVTNVE
201: TTHYILGSVA GPHPYPMMVR DFHAVIGKET RKQALEKWGG KPDVLVACIG GGSNAMGLFH EFVDDDNVRL IGVEAAGFGI DSGKHAATLT KGEVGVLHGA
301: MSYLLQDEDG QIVEPHSISA GLDYPGVGPE HSFLKDLGRA EYYSITDEEA LEAFKRLSRL EGIIPALETS HALAYLEKLC PTLPNGTRLV LNCSGRGDKD
401: VQTAIKYLKV

Best Arabidopsis Sequence Match ( AT4G27070.1 )
(BLAST)

001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV

Arabidopsis Description

TSB2Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WS13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.