Factsheet for Solyc10g006400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g064280.2.1
Solyc10g006400.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	Solyc07g064280.2.1	AT5G54810.1	21798944
AT5G54810.1	Solyc10g006400.2.1	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037303	Potato	cytosol	86.75	99.02
Solyc07g064280.2.1	Tomato	plastid	83.97	86.18
KRH37954	Soybean	cytosol	28.21	85.71
GSMUA_Achr4P07140_001	Banana	mitochondrion	76.92	83.53
VIT_19s0177g00310.t01	Wine grape	plastid	80.34	82.1
KRG98855	Soybean	mitochondrion, plastid	80.77	80.25
AT5G54810.1	Thale cress	plastid	80.56	80.21
AT4G27070.1	Thale cress	plastid	81.41	80.21
KRH46102	Soybean	nucleus, plastid	80.56	78.71
EES13315	Sorghum	plastid	77.14	75.84
TraesCS7D01G305300.1	Wheat	plastid	76.07	75.74
TraesCS7A01G308600.1	Wheat	plastid	76.07	75.74
TraesCS7B01G208700.1	Wheat	plastid	75.85	75.53
Zm00001d049610_P001	Maize	plastid	76.07	75.11
Os08t0135900-01	Rice	plastid	75.43	74.95
Zm00001d024702_P001	Maize	plastid	76.07	74.32
Bra026381.1-P	Field mustard	cytosol	15.6	72.28
HORVU7Hr1G073460.3	Barley	plastid	76.92	71.29
CDX89281	Canola	cytosol	15.38	71.29
Solyc10g018390.1.1	Tomato	cytosol	53.21	54.73
Solyc10g005320.2.1	Tomato	plastid	53.42	54.35
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	11.54	54.0
Solyc10g018380.1.1	Tomato	cytosol	22.65	50.72
Solyc12g096190.1.1	Tomato	plastid	23.72	22.56

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0004834	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073
GO:GO:0009987	GO:GO:0016829	UniProt:K4CXH1	HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413
InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	SUPFAM:SSF53686	EnsemblPlantsGene:Solyc10g006400.2
EnsemblPlants:Solyc10g006400.2.1	TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI000276AB90	SEG:seg	:	:	:	:

Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:K4CXH1]

Coordinates

chr10:+:1014935..1019360

Molecular Weight (calculated)

50916.9 Da

IEP (calculated)

6.865

GRAVY (calculated)

-0.198

Length

468 amino acids

Sequence
(BLAST)

001: MAFSSTVSPK HCRLSSAASS SSSFPKFQIP LKINNITPCH SSSKFPPSIV CVLTEKQSMA AQAVDEPAAI QRPDSFGRFG KFGGKYVPET LMHALDELET
101: AFKSLATDEA FQKELDGILR DYVGRESPLY FAERLTEHYK RPNGEGPLIY LKREDLNHTG AHKINNAVAQ ALLAKRLGKK RIIAETGAGQ HGVATATVCA
201: RFGLECIIYM GAQDMERQAL NVFRMRLLGA EVRAVHSGTA TLKDATSEAI RDWVTNVETT HYILGSVAGP HPYPMMVRDF HAVIGKETRK QALEKWGGKP
301: DVLVACIGGG SNAMGLFHEF VDDEDVRLIG VEAAGFGVDS GKHAATLTKG EVGVLHGAMS YLLQDEDGQI VEPHSISAGL DYPGVGPEHS FLKDLGRAEY
401: YSITDEEALE AFKRLSRLEG IIPALETSHA LAYLEKLCPT LPNGTRVVLN CSGRGDKDVQ TAIKYLKV

Best Arabidopsis Sequence Match ( AT4G27070.1 )
(BLAST)

001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV

Arabidopsis Description

TSB2Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WS13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.