CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026381.1-P	Field mustard	cytosol	97.03	97.03
CDY53670	Canola	cytosol	51.49	44.07
KRH37954	Soybean	cytosol	66.34	43.51
CDY05419	Canola	cytosol	35.64	37.89
CDY57048	Canola	cytosol	38.61	30.95
CDY55463	Canola	cytosol	66.34	22.41
CDX82609	Canola	cytosol	66.34	22.41
CDY56040	Canola	plastid	54.46	18.03
PGSC0003DMT400037303	Potato	cytosol	72.28	17.8
CDX99679	Canola	cytosol	18.81	17.27
GSMUA_Achr4P07140_001	Banana	mitochondrion	72.28	16.94
CDY21004	Canola	mitochondrion	53.47	16.07
CDY19860	Canola	plastid	73.27	15.91
CDY17275	Canola	plastid	73.27	15.91
CDY46668	Canola	plastid	74.26	15.89
CDX92783	Canola	plastid	74.26	15.89
PGSC0003DMT400002722	Potato	plastid	71.29	15.79
Solyc07g064280.2.1	Tomato	plastid	71.29	15.79
VIT_19s0177g00310.t01	Wine grape	plastid	71.29	15.72
Solyc10g006400.2.1	Tomato	plastid	71.29	15.38
KRG98855	Soybean	mitochondrion, plastid	71.29	15.29
KRH46102	Soybean	nucleus, plastid	71.29	15.03
CDY30322	Canola	plastid	54.46	12.47
CDY49790	Canola	mitochondrion	55.45	12.02
CDY63316	Canola	cytosol	25.74	6.74
CDY50576	Canola	plastid	25.74	5.45
CDY30314	Canola	plastid	25.74	5.45
CDY72593	Canola	cytosol, plastid	13.86	5.24
CDX67409	Canola	plastid	24.75	5.24
CDY52465	Canola	plastid	25.74	5.2
CDX99680	Canola	plastid	24.75	5.0
CDX74518	Canola	plastid	24.75	5.0
CDY01654	Canola	plastid	24.75	4.99

Protein Annotations

EnsemblPlants:CDX89281	EnsemblPlantsGene:GSBRNA2T00149495001	Gene3D:3.40.50.1100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Trp_synth_beta
InterPro:Trypto_synt_PLP_dependent	KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	ProteinID:CDX89281
ProteinID:CDX89281.1	SUPFAM:SSF53686	UniParc:UPI0004EEE058	MapMan:35.1	:	:

Description

BnaA01g16120D

Coordinates

chrLK031858:-:701057..701529

Molecular Weight (calculated)

11376.4 Da

IEP (calculated)

5.133

GRAVY (calculated)

-0.450

Length

101 amino acids

Sequence
(BLAST)

001: MSYLLQDDDG QITEPRSSIS AGLDYPGVGP EHGFHKDVGR AEYYSVIDGE ALEAFKRVSR LEGIIPVLET SHALAHLEKL CPTLPLTRWN QRGLEFHWER
101: G

Best Arabidopsis Sequence Match ( AT4G27070.1 )
(BLAST)

001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV

Arabidopsis Description

TSB2Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WS13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.