CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72593	Canola	cytosol, plastid	56.69	93.63
Bra037230.1-P	Field mustard	plastid	92.06	92.06
CDY05419	Canola	cytosol	18.14	84.21
CDY21004	Canola	mitochondrion	59.64	78.27
CDY49790	Canola	mitochondrion	73.47	69.53
CDY57048	Canola	cytosol	18.14	63.49
CDY55463	Canola	cytosol	42.18	62.21
CDX82609	Canola	cytosol	41.72	61.54
PGSC0003DMT400029363	Potato	plastid	59.64	57.3
VIT_10s0116g00710.t01	Wine grape	plastid	61.45	56.81
Solyc10g005320.2.1	Tomato	plastid	58.5	56.09
CDX89281	Canola	cytosol	12.47	54.46
Solyc10g018390.1.1	Tomato	cytosol	55.78	54.07
KRH27603	Soybean	mitochondrion	56.01	53.46
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	12.02	53.0
CDY17275	Canola	plastid	55.33	52.47
CDY19860	Canola	plastid	55.1	52.26
CDY46668	Canola	plastid	55.56	51.91
CDX92783	Canola	plastid	55.33	51.69
Solyc10g018380.1.1	Tomato	cytosol	24.04	50.72
CDY53670	Canola	cytosol	13.38	50.0
PGSC0003DMT400074916	Potato	cytosol	11.11	49.49
CDY56040	Canola	plastid	31.75	45.9
CDY63316	Canola	cytosol	23.36	26.68
CDX99679	Canola	cytosol	5.67	22.73
CDX67409	Canola	plastid	23.36	21.59
CDX74518	Canola	plastid	24.26	21.4
CDY50576	Canola	plastid	23.13	21.38
CDY30314	Canola	plastid	23.13	21.38
CDY01654	Canola	plastid	24.26	21.36
HORVU4Hr1G035330.1	Barley	plastid	6.58	21.32
CDY52465	Canola	plastid	24.04	21.2
CDX99680	Canola	plastid	23.81	21.0

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:50.4.2	GO:A0A078GYI7	UniProt:A0A078GYI7
EnsemblPlants:CDY30322	ProteinID:CDY30322	ProteinID:CDY30322.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824
GO:GO:0004834	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009073	GO:GO:0009987	GO:GO:0016829	EnsemblPlantsGene:GSBRNA2T00044995001	HAMAP:MF_00133	PFAM:PF00291
PIRSF:PIRSF001413	InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF2	SUPFAM:SSF53686
TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniPathway:UPA00035
UniParc:UPI0004EEF5EC	SEG:seg	:	:	:	:

Description

BnaA09g09550DTryptophan synthase [Source:UniProtKB/TrEMBL;Acc:A0A078GYI7]

Coordinates

chrLK032252:-:223820..228572

Molecular Weight (calculated)

46990.2 Da

IEP (calculated)

7.772

GRAVY (calculated)

-0.142

Length

441 amino acids

Sequence
(BLAST)

001: MCWDAELHQG GVSRPKRRPS PSPSHQVASP LLQGIPVTVS VQQQRLSGKN GASGTSKGQA GAVDVSKAAA LLFFFTRVLT DEELTTALRD YAGRETPLYF
101: AGRLTEHYKS ISRTTGDGPE IYLKREDLSH CGSHKINNAL AQAMIARRLG CSRVVAATGA GQHGVATAAA CAKFSMECTV FMGTADKEKQ FSNVLSMKML
201: GAQVKSVEGT FKDASSEAIR NWVGNLKTTY YLSGTVVGPH PSPLMVREFQ SVIGKETRRQ ANQLWGGKPD VLVACVGSGS NALGLFHEFV GDEDVRLVGV
301: EAAGLGLDSG KHSATLAVGD VGVYHGSMSY LLQDDEGQIL KPHSVGVGLE YPGVGPEISF LKETGRAEFY TATDQEAIQA CRLLSRLEGI IPALEPSHAL
401: AFLDKLVPTL RDGAKVVVNC SGRGDKDLDT LIQRGLPSSL C

Best Arabidopsis Sequence Match ( AT5G28237.1 )
(BLAST)

001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC
101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL
201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV
301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE
401: AIQACMRLSR LEGIIPALEA SHALAFLDKL VPTLRDGAKV VVNCSGRGDK DLDTLIQRGM PSSFC

Arabidopsis Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F4K727]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.