CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72593	Canola	cytosol, plastid	52.58	91.76
CDY21004	Canola	mitochondrion	57.08	79.17
CDY05419	Canola	cytosol	15.24	74.74
CDY30322	Canola	plastid	69.53	73.47
CDY55463	Canola	cytosol	39.91	62.21
VIT_10s0116g00710.t01	Wine grape	plastid	63.52	62.05
PGSC0003DMT400029363	Potato	plastid	60.73	61.66
CDX82609	Canola	cytosol	39.48	61.54
CDY57048	Canola	cytosol	16.52	61.11
Solyc10g018390.1.1	Tomato	cytosol	57.51	58.9
KRH27603	Soybean	mitochondrion	58.37	58.87
Solyc10g005320.2.1	Tomato	plastid	57.94	58.7
CDY17275	Canola	plastid	57.51	57.63
CDY19860	Canola	plastid	57.3	57.42
CDX92783	Canola	plastid	57.94	57.2
CDY46668	Canola	plastid	57.73	56.99
CDX89281	Canola	cytosol	12.02	55.45
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	11.37	53.0
PGSC0003DMT400074916	Potato	cytosol	10.94	51.52
Solyc10g018380.1.1	Tomato	cytosol	22.96	51.2
CDY53670	Canola	cytosol	12.66	50.0
CDY56040	Canola	plastid	30.69	46.89
CDY63316	Canola	cytosol	21.24	25.65
CDX99679	Canola	cytosol	5.15	21.82
HORVU4Hr1G035330.1	Barley	plastid	6.01	20.59
CDX67409	Canola	plastid	21.03	20.55
CDY50576	Canola	plastid	20.82	20.34
CDY30314	Canola	plastid	20.82	20.34
CDX74518	Canola	plastid	21.67	20.2
CDY01654	Canola	plastid	21.67	20.16
CDY52465	Canola	plastid	21.46	20.0
CDX99680	Canola	plastid	21.46	20.0

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:50.4.2	GO:A0A078IFW1	UniProt:A0A078IFW1
EnsemblPlants:CDY49790	ProteinID:CDY49790	ProteinID:CDY49790.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824
GO:GO:0004834	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009073	GO:GO:0009987	GO:GO:0016829	EnsemblPlantsGene:GSBRNA2T00093810001	HAMAP:MF_00133	PFAM:PF00291
PIRSF:PIRSF001413	InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF2	SUPFAM:SSF53686
TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniPathway:UPA00035
UniParc:UPI0004EAC1AE	:	:	:	:	:

Description

BnaCnng18030DTryptophan synthase [Source:UniProtKB/TrEMBL;Acc:A0A078IFW1]

Coordinates

chrLK032859:+:23491..27048

Molecular Weight (calculated)

50582.8 Da

IEP (calculated)

7.733

GRAVY (calculated)

-0.126

Length

466 amino acids

Sequence
(BLAST)

001: MSSTKIFQVR GQPLPRFPVR NHRMINTVVC GFPIISHHRV SNVLSRTSGP FLGYVPARTD ENPFLRGDSN GRFGKFGGKF VPETLMSCLR DLEDEFNFVL
101: SDHEFQVEFT AALRDYVGRE TPLYFAERLT QHYKNIARTT GDGPEIYLKR EDLCHGGSHK INNALAQAMI ARRLGCSRVV AATGSGQHGV ATAAACAKLS
201: LECTVFMGTT DIEKQSSNVL SMKLLGAQVK SVQGTFQDAS SEAIRNWVGK LETTYYLPGT VVGPHPSPVM VREFQSVIGK ETRRQAKQLW GGKPDVLVAC
301: VGSGSNALGL FHEFVRDEDV RLVGVEAAGL GLDSGKHSAT LAVGDVGVYH GSMSYLLQDD QGQILRPHSI GVGLEYPGVG PEISFLKESG RAEFCTATDQ
401: EAIQACMLLS RLEGIIPALE TSHALAILEK LVPTLRDGAK VVVNCSGRGD KDINTLIQRG MPSSLC

Best Arabidopsis Sequence Match ( AT5G28237.1 )
(BLAST)

001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC
101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL
201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV
301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE
401: AIQACMRLSR LEGIIPALEA SHALAFLDKL VPTLRDGAKV VVNCSGRGDK DLDTLIQRGM PSSFC

Arabidopsis Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F4K727]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.