CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82609
CDY17275
CDY19860
CDY53670
CDY55463
CDY56040

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	CDX82609	AT5G54810.1	21798944
AT5G54810.1	CDY17275	AT5G54810.1	21798944
AT5G54810.1	CDY19860	AT5G54810.1	21798944
AT5G54810.1	CDY53670	AT5G54810.1	21798944
AT5G54810.1	CDY55463	AT5G54810.1	21798944
AT5G54810.1	CDY56040	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002954.1-P	Field mustard	plastid	99.78	99.78
CDY19860	Canola	plastid	99.14	99.14
CDX82609	Canola	cytosol	58.49	90.97
CDY55463	Canola	cytosol	58.28	90.64
CDX92783	Canola	plastid	90.32	88.98
CDY46668	Canola	plastid	89.89	88.56
AT5G54810.1	Thale cress	plastid	88.6	87.66
Zm00001d049610_P001	Maize	plastid	79.14	77.64
TraesCS7A01G308600.1	Wheat	plastid	77.85	77.02
TraesCS7D01G305300.1	Wheat	plastid	77.85	77.02
TraesCS7B01G208700.1	Wheat	plastid	77.63	76.81
EES13315	Sorghum	plastid	78.49	76.68
CDY53670	Canola	cytosol	19.35	76.27
Zm00001d024702_P001	Maize	plastid	78.06	75.78
Os08t0135900-01	Rice	plastid	75.91	74.95
CDX89281	Canola	cytosol	15.91	73.27
HORVU7Hr1G073460.3	Barley	plastid	77.63	71.49
CDY72593	Canola	cytosol, plastid	38.49	67.04
CDY56040	Canola	plastid	40.43	61.64
CDY49790	Canola	mitochondrion	57.63	57.51
CDY21004	Canola	mitochondrion	40.86	56.55
CDY30322	Canola	plastid	52.47	55.33
CDY05419	Canola	cytosol	11.18	54.74
CDY57048	Canola	cytosol	12.9	47.62
CDY63316	Canola	cytosol	22.8	27.46
CDX99679	Canola	cytosol	5.38	22.73
CDY52465	Canola	plastid	23.87	22.2
CDX99680	Canola	plastid	23.66	22.0
CDX67409	Canola	plastid	22.37	21.8
CDX74518	Canola	plastid	23.44	21.8
CDY01654	Canola	plastid	23.44	21.76
CDY50576	Canola	plastid	22.15	21.59
CDY30314	Canola	plastid	22.15	21.59

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2	GO:A0A078FRW6	UniProt:A0A078FRW6
EnsemblPlants:CDY17275	ProteinID:CDY17275	ProteinID:CDY17275.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824
GO:GO:0004834	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009073	GO:GO:0009987	GO:GO:0016829	EnsemblPlantsGene:GSBRNA2T00095360001	HAMAP:MF_00133	PFAM:PF00291
PIRSF:PIRSF001413	InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	SUPFAM:SSF53686
TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniPathway:UPA00035
UniParc:UPI0003E6A4E4	:	:	:	:	:

Description

BnaA10g09090DTryptophan synthase [Source:UniProtKB/TrEMBL;Acc:A0A078FRW6]

Coordinates

chrLK032072:-:7316..9490

Molecular Weight (calculated)

50491.2 Da

IEP (calculated)

6.905

GRAVY (calculated)

-0.206

Length

465 amino acids

Sequence
(BLAST)

001: MAASGTVASF RTSVSSSPQL THLRSPSKAL KFTPLPSSRA RPSFSVSCTI AKDPPVLMSA GSDPSLWQRP DSFGRFGKFG GKYVPETLMH ALSELETAFH
101: SLATDDDFQR ELAGILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV ATATVCARFG
201: LECIIYMGAQ DMERQALNVF RMRLLGAEVR AVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRRQAL EKWGGKPDVL
301: VACVGGGSNA MGLFHEFVND TEVRLIGVEA AGFGVDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK DMGRAEYFSV
401: TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GSRVVLNFSG RGDKDVQTVA KYLEV

Best Arabidopsis Sequence Match ( AT5G54810.1 )
(BLAST)

001: MAASGTSATF RASVSSAPSS SSQLTHLKSP FKAVKYTPLP SSRSKSSSFS VSCTIAKDPP VLMAAGSDPA LWQRPDSFGR FGKFGGKYVP ETLMHALSEL
101: ESAFYALATD DDFQRELAGI LKDYVGRESP LYFAERLTEH YRRENGEGPL IYLKREDLNH TGAHKINNAV AQALLAKRLG KKRIIAETGA GQHGVATATV
201: CARFGLECII YMGAQDMERQ ALNVFRMRLL GAEVRGVHSG TATLKDATSE AIRDWVTNVE TTHYILGSVA GPHPYPMMVR DFHAVIGKET RKQALEKWGG
301: KPDVLVACVG GGSNAMGLFH EFVNDTEVRM IGVEAAGFGL DSGKHAATLT KGDVGVLHGA MSYLLQDDDG QIIEPHSISA GLDYPGVGPE HSFFKDMGRA
401: EYYSITDEEA LEAFKRVSRL EGIIPALETS HALAYLEKLC PTLSDGTRVV LNFSGRGDKD VQTVAKYLDV

Arabidopsis Description

TSB1Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.