CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38530.1	CDY42827	AT2G42580.1	19000166
AT5G38530.1	CDY51514	AT2G42580.1	19000166
AT5G38530.1	CDY55390	AT2G42580.1	19000166
AT5G38530.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028191.1-P	Field mustard	plastid	99.8	99.8
CDY01654	Canola	plastid	98.0	97.8
CDY63316	Canola	cytosol	71.0	91.97
CDY30314	Canola	plastid	87.6	91.82
CDX67409	Canola	plastid	87.4	91.61
CDY50576	Canola	plastid	87.2	91.4
CDX99679	Canola	cytosol	19.8	90.0
CDY52465	Canola	plastid	89.8	89.8
CDX99680	Canola	plastid	89.8	89.8
AT5G38530.1	Thale cress	plastid	86.6	85.57
Zm00001d046676_P001	Maize	extracellular	59.0	79.09
Solyc12g096190.1.1	Tomato	plastid	77.4	78.66
PGSC0003DMT400075555	Potato	plastid	75.8	77.03
VIT_14s0083g00460.t01	Wine grape	plastid	74.2	74.95
KRG93806	Soybean	cytosol	35.4	74.06
KRH18295	Soybean	nucleus, plastid	73.2	72.91
TraesCS7A01G392800.1	Wheat	plastid	70.4	72.28
HORVU7Hr1G092800.3	Barley	plastid	70.2	71.63
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	69.4	71.25
Os06t0632200-02	Rice	plastid	69.4	71.25
TraesCS7D01G388400.3	Wheat	cytosol	70.0	70.99
KXG20416	Sorghum	plastid	70.0	70.85
GSMUA_Achr2P05390_001	Banana	plastid	70.0	69.86
TraesCS2A01G257700.1	Wheat	nucleus	11.0	53.4
CDY05419	Canola	cytosol	5.6	29.47
CDY72593	Canola	cytosol, plastid	15.4	28.84
CDY57048	Canola	cytosol	7.2	28.57
CDY55463	Canola	cytosol	16.6	27.76
CDX82609	Canola	cytosol	16.2	27.09
CDX89281	Canola	cytosol	5.0	24.75
CDY21004	Canola	mitochondrion	16.6	24.7
CDY30322	Canola	plastid	21.4	24.26
CDY17275	Canola	plastid	21.8	23.44
CDY19860	Canola	plastid	21.8	23.44
CDX92783	Canola	plastid	22.0	23.31
CDY46668	Canola	plastid	22.0	23.31
CDY53670	Canola	cytosol	5.4	22.88
CDY49790	Canola	mitochondrion	20.2	21.67
CDY56040	Canola	plastid	13.0	21.31

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	GO:A0A078CHS4	EnsemblPlants:CDX74518
ProteinID:CDX74518	ProteinID:CDX74518.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834
GO:GO:0005488	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00114429001	HAMAP:MF_00133	PFAM:PF00291	InterPro:PLP-dep	PANTHER:PTHR43565
SUPFAM:SSF53686	TIGRFAMs:TIGR01415	InterPro:Trp_synth_b-like	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent
UniPathway:UPA00035	UniParc:UPI0004EE5B3E	SEG:seg	:	:	:

Description

BnaA04g08710D

Coordinates

chrLK031801:-:1056253..1058572

Molecular Weight (calculated)

55130.2 Da

IEP (calculated)

7.656

GRAVY (calculated)

-0.252

Length

500 amino acids

Sequence
(BLAST)

001: MAAQLLLPPN PFTKSASAKL FFTGDDSTLK RKSKHPTRVS NGFSLRANAA LRSNHSSSVE IPSRWYNIVA DLSVKPPPPL HPKTYEPIKP EDLAHLFPNE
101: IIKQEATLER FIDIPEEVLE IYKLWRPTPL IRAKRLEKLL QTPARIYFKY EGGSPAGSHK PNSAVPQAYY NAKEGVKNLV TETGAGQWGS SLAFASSLFG
201: LNCEVWQVAN SYHQKPYRRL MMQTWGAKVH PSPSDLTEAG RRILQVDPSS PGSLGIAISE AVEVAARNED TKYCLGSVLN HVLLHQTVIG EECIKQMEDF
301: GETPDVIIGC TGGGSNFAGL SFPYIREKLK GKINPVIRAV EPSACPSLTK GVYAYDFGDT AGLTPLMKMH TLGHDFIPDP IHSGGLRYHG MAPLISHVYE
401: QGFMEAISIP QTECFQGAIQ FARTEGIIPA PEPTHAIAAT IREALRCKET GEAKVILMAM CGHGHFDLSS YDKYLRGELI DLSFSEERIR ESLSKVPHVV

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.