Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d046676_P001 | Maize | extracellular | 62.67 | 84.18 |
| CDY63316 | Canola | cytosol | 60.28 | 78.24 |
| VIT_14s0083g00460.t01 | Wine grape | plastid | 75.65 | 76.57 |
| KXG20416 | Sorghum | plastid | 75.05 | 76.11 |
| Solyc12g096190.1.1 | Tomato | plastid | 74.25 | 75.61 |
| CDX99679 | Canola | cytosol | 16.57 | 75.45 |
| TraesCS7B01G294800.1 | Wheat | mitochondrion, plastid | 73.05 | 75.15 |
| TraesCS7A01G392800.1 | Wheat | plastid | 73.05 | 75.15 |
| HORVU7Hr1G092800.3 | Barley | plastid | 73.25 | 74.9 |
| Os06t0632200-02 | Rice | plastid | 72.46 | 74.54 |
| PGSC0003DMT400075555 | Potato | plastid | 72.46 | 73.78 |
| TraesCS7D01G388400.3 | Wheat | cytosol | 72.46 | 73.63 |
| KRH18295 | Soybean | nucleus, plastid | 73.05 | 72.91 |
| KRG93806 | Soybean | cytosol | 34.33 | 71.97 |
| Bra028413.1-P | Field mustard | plastid | 70.46 | 70.6 |
| CDY01654 | Canola | plastid | 70.26 | 70.26 |
| Bra028191.1-P | Field mustard | plastid | 70.06 | 70.2 |
| AT5G38530.1 | Thale cress | plastid | 70.86 | 70.16 |
| CDX74518 | Canola | plastid | 69.86 | 70.0 |
| CDY30314 | Canola | plastid | 66.07 | 69.39 |
| CDY50576 | Canola | plastid | 65.87 | 69.18 |
| CDX67409 | Canola | plastid | 65.67 | 68.97 |
| CDY52465 | Canola | plastid | 68.46 | 68.6 |
| CDX99680 | Canola | plastid | 68.46 | 68.6 |
| Bra025430.1-P | Field mustard | plastid | 66.27 | 67.21 |
| TraesCS2A01G257700.1 | Wheat | nucleus | 10.78 | 52.43 |
| GSMUA_Achr4P07140_001 | Banana | mitochondrion | 22.55 | 26.22 |
Protein Annotations
| KEGG:00260+4.2.1.20 | KEGG:00400+4.2.1.20 | Gene3D:3.40.50.1100 | MapMan:35.1 | GO:GO:0000162 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004834 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006568 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030170 | GO:GO:0042803 | GO:GO:0052684 |
| EnsemblPlantsGene:GSMUA_Achr2G05390_001 | EnsemblPlants:GSMUA_Achr2P05390_001 | EnsemblPlants:GSMUA_Achr2T05390_001 | UniProt:M0S5D0 | HAMAP:MF_00133 | PFAM:PF00291 |
| InterPro:PLP-dep | PANTHER:PTHR43565 | SUPFAM:SSF53686 | TIGRFAMs:TIGR01415 | InterPro:Trp_synth_b-like | InterPro:Trp_synth_beta |
| InterPro:Trp_synth_beta/beta-like | InterPro:Trypto_synt_PLP_dependent | UniParc:UPI000295C9E3 | : | : | : |
Description
Tryptophan synthase beta chain 2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G05390_001]
Coordinates
chr2:-:10515832..10519481
Molecular Weight (calculated)
54948.2 Da
IEP (calculated)
6.819
GRAVY (calculated)
-0.182
Length
501 amino acids
Sequence
(BLAST)
(BLAST)
001: MATALLPSSP FSDRLRRSFP GVERSLLGSA PSLKFTVHKN LSHAHGLRTR AVYGDVNKVE IPRQWYNVVA DLPIKPPPAL HPKTHKPLKH EDLSPLFPDE
101: LIRQELSDDR FIPIPDEVID IYKLWRPTPL IRAKRLEKLL GTPAKIYYKY EGTSPAGSHK PNTAVPQAWY NAQQGVKNVV TETGAGQWGS SLAFACSLFG
201: LNCEVWQVRA SYDQKPYRKL MMQTWGAQVH PSPSSVTNTG RKILQEDPSS PGSLGIAISE AVEVAATHED TKYCLGSVLN HVLLHQTLIG EECLSQLEAL
301: GETPDVIIGC TGGGSNFGGL TFPFIREMLK GRMDPLIRAV EPAACPSLTE GVYTYDYGDT AGMTPLMKMH TLGHDFVPDP IHAGGLRYHG MAPLISHVYE
401: MGFMEAIAIP QTECFQAALQ FARTEGLIPA PEPTHAIAAA IREALHCKDT GEEKVILMAM CGHGHFDLAA YEKYLQGNMV DLSHSNEKVQ ASLAAIPHIV
501: P
101: LIRQELSDDR FIPIPDEVID IYKLWRPTPL IRAKRLEKLL GTPAKIYYKY EGTSPAGSHK PNTAVPQAWY NAQQGVKNVV TETGAGQWGS SLAFACSLFG
201: LNCEVWQVRA SYDQKPYRKL MMQTWGAQVH PSPSSVTNTG RKILQEDPSS PGSLGIAISE AVEVAATHED TKYCLGSVLN HVLLHQTLIG EECLSQLEAL
301: GETPDVIIGC TGGGSNFGGL TFPFIREMLK GRMDPLIRAV EPAACPSLTE GVYTYDYGDT AGMTPLMKMH TLGHDFVPDP IHAGGLRYHG MAPLISHVYE
401: MGFMEAIAIP QTECFQAALQ FARTEGLIPA PEPTHAIAAA IREALHCKDT GEEKVILMAM CGHGHFDLAA YEKYLQGNMV DLSHSNEKVQ ASLAAIPHIV
501: P
001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV
Arabidopsis Description
TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.