Factsheet for TraesCS7B01G294800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38530.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G392800.1	Wheat	plastid	91.17	91.17
HORVU7Hr1G092800.3	Barley	plastid	91.17	90.61
TraesCS7D01G388400.3	Wheat	cytosol	90.76	89.66
Zm00001d046676_P001	Maize	extracellular	68.17	89.01
Os06t0632200-02	Rice	plastid	81.52	81.52
KXG20416	Sorghum	plastid	82.14	80.97
CDY63316	Canola	cytosol	61.19	77.2
GSMUA_Achr2P05390_001	Banana	plastid	75.15	73.05
CDX99679	Canola	cytosol	16.22	71.82
Solyc12g096190.1.1	Tomato	plastid	72.48	71.75
VIT_14s0083g00460.t01	Wine grape	plastid	72.9	71.72
PGSC0003DMT400075555	Potato	plastid	71.66	70.94
KRH18295	Soybean	nucleus, plastid	72.48	70.32
Bra028413.1-P	Field mustard	plastid	71.66	69.8
Bra028191.1-P	Field mustard	plastid	71.46	69.6
CDX74518	Canola	plastid	71.25	69.4
CDY01654	Canola	plastid	71.25	69.26
KRG93806	Soybean	cytosol	33.68	68.62
CDY30314	Canola	plastid	66.74	68.13
CDX67409	Canola	plastid	66.74	68.13
CDY50576	Canola	plastid	66.53	67.92
AT5G38530.1	Thale cress	plastid	70.43	67.79
CDX99680	Canola	plastid	69.4	67.6
CDY52465	Canola	plastid	69.4	67.6
Bra025430.1-P	Field mustard	plastid	67.76	66.8
TraesCS7B01G208700.1	Wheat	plastid	22.59	23.4

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0004834	GO:GO:0005488	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0030170	HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413
PIRSF:PIRSF500824	InterPro:PLP-dep	PANTHER:PTHR43565	SUPFAM:SSF53686	TIGRFAMs:TIGR01415	EnsemblPlantsGene:TraesCS7B01G294800
EnsemblPlants:TraesCS7B01G294800.1	InterPro:Trp_synth_b-like	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	TIGR:cd06446
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:+:531658121..531661081

Molecular Weight (calculated)

52893.6 Da

IEP (calculated)

6.828

GRAVY (calculated)

-0.166

Length

487 amino acids

Sequence
(BLAST)

001: MATALRPPRL PAVPEQASSL HRLPKYRVAV TGRRSFAARA GSYPGNVGVP KQWYNLIADL PVKPPPMLHP GTHQPLNPSD LAPLFPDELI RQELTEERFI
101: DIPDEVRDVY ELWRPTPLIR AKRLEKLLGT PAKIYYKYEG TSPAGSHKGN TAVPQAWYNA AAGVKNVVTE TGAGQWGSAL SFASTLFGLN CEVWQVRASY
201: DQKPYRRLMM ETWGAKVHPS PSDVTEAGRK LLAADPASPG SLGMAISEAV EVAATNADTK YCLGSVLNHV LLHQTVIGEE CLEQLAAIGD TPDVVIGCTG
301: GGSNFGGLAF PFMREKLAGR MSPQFKAVEP AACPTLTKGV YAYDYGDTAG LTPLMKMHTL GHDFVPDPIH AGGLRYHGMA PLISHVYELG FMEAMSIQQT
401: ECFEAALQFA RTEGIIPAPE PTHAIAAAIR EALECKRTGE EKVILIAMCG HGHFDLAAYD RYLRGDMIDL SHSSEKLKES LGAIPKV

Best Arabidopsis Sequence Match ( AT5G54810.1 )
(BLAST)

001: MAASGTSATF RASVSSAPSS SSQLTHLKSP FKAVKYTPLP SSRSKSSSFS VSCTIAKDPP VLMAAGSDPA LWQRPDSFGR FGKFGGKYVP ETLMHALSEL
101: ESAFYALATD DDFQRELAGI LKDYVGRESP LYFAERLTEH YRRENGEGPL IYLKREDLNH TGAHKINNAV AQALLAKRLG KKRIIAETGA GQHGVATATV
201: CARFGLECII YMGAQDMERQ ALNVFRMRLL GAEVRGVHSG TATLKDATSE AIRDWVTNVE TTHYILGSVA GPHPYPMMVR DFHAVIGKET RKQALEKWGG
301: KPDVLVACVG GGSNAMGLFH EFVNDTEVRM IGVEAAGFGL DSGKHAATLT KGDVGVLHGA MSYLLQDDDG QIIEPHSISA GLDYPGVGPE HSFFKDMGRA
401: EYYSITDEEA LEAFKRVSRL EGIIPALETS HALAYLEKLC PTLSDGTRVV LNFSGRGDKD VQTVAKYLDV

Arabidopsis Description

TSB1Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.