Factsheet for VIT_14s0083g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0028g02240.t01
VIT_18s0001g09830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38530.1	VIT_12s0028g02240.t01	AT2G42580.1	19000166
AT5G38530.1	VIT_18s0001g09830.t01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63316	Canola	cytosol	64.24	82.38
Solyc12g096190.1.1	Tomato	plastid	79.6	80.08
Zm00001d046676_P001	Maize	extracellular	60.2	79.89
PGSC0003DMT400075555	Potato	plastid	78.18	78.66
CDX99679	Canola	cytosol	17.37	78.18
KRH18295	Soybean	nucleus, plastid	79.19	78.09
KRG93806	Soybean	cytosol	36.97	76.57
Bra028413.1-P	Field mustard	plastid	76.57	75.8
GSMUA_Achr2P05390_001	Banana	plastid	76.57	75.65
CDY30314	Canola	plastid	72.12	74.84
CDY01654	Canola	plastid	75.35	74.45
CDX67409	Canola	plastid	71.72	74.42
CDY50576	Canola	plastid	71.72	74.42
Bra028191.1-P	Field mustard	plastid	75.15	74.4
AT5G38530.1	Thale cress	plastid	75.96	74.31
CDX74518	Canola	plastid	74.95	74.2
CDY52465	Canola	plastid	74.14	73.4
CDX99680	Canola	plastid	74.14	73.4
TraesCS7A01G392800.1	Wheat	plastid	72.12	73.31
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	71.72	72.9
KXG20416	Sorghum	plastid	72.73	72.87
HORVU7Hr1G092800.3	Barley	plastid	71.92	72.65
TraesCS7D01G388400.3	Wheat	cytosol	72.12	72.41
Bra025430.1-P	Field mustard	plastid	71.72	71.86
Os06t0632200-02	Rice	plastid	70.3	71.46
TraesCS2A01G257700.1	Wheat	nucleus	11.11	53.4
VIT_19s0177g00310.t01	Wine grape	plastid	22.42	24.24
VIT_10s0116g00710.t01	Wine grape	plastid	21.01	21.8

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	EntrezGene:100261704	wikigene:100261704	Gene3D:3.40.50.1100	MapMan:35.1
ProteinID:CBI16881	ProteinID:CBI16881.3	UniProt:D7SMI3	EMBL:FN594955	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0004834	GO:GO:0005488	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0030170	EntrezGene:LOC100261704	wikigene:LOC100261704	HAMAP:MF_00133
PFAM:PF00291	PIRSF:PIRSF001413	PIRSF:PIRSF500824	InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR43565
SUPFAM:SSF53686	TIGRFAMs:TIGR01415	InterPro:Trp_synth_b-like	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0001BE11A7	ArrayExpress:VIT_14s0083g00460	EnsemblPlantsGene:VIT_14s0083g00460	EnsemblPlants:VIT_14s0083g00460.t01	unigene:Vvi.2484
RefSeq:XP_002279124	RefSeq:XP_002279124.2	RefSeq:XP_002279124.3	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:-:22547153..22550143

Molecular Weight (calculated)

53975.2 Da

IEP (calculated)

6.785

GRAVY (calculated)

-0.118

Length

495 amino acids

Sequence
(BLAST)

001: MVQSLLSASL LSISSPSFSI KVGEQGKPML LRASPRCRVR ARAASSKAGP QAVEIPHQWY NLIADLPVKP PPALHPQTQE PIKPEDLSPL FPDELIKQEA
101: STDRFIAIPE EVIDVYRLWR PTPLIRAKRL EKLLDTPARI YYKYEGVSPA GSHKPNTAVP QVWYNAQEGV KSVTTETGAG QWGSSLAFAC SLFGLDCEVW
201: QVRASYDQKP YRNLMMQTWG AKVHPSPSSI TEAGRKILQM NPSSPGSLGI AISEAVEVAA ANADTKYCLG SVLNHVLLHQ TVIGEECIKQ MEAIGETPDV
301: IIGCTGGGSN FGGLTFPFIR EKLKGRINPL IRAVEPTACP SLTKGVYAYD YGDTAGMTPL MKMHTLGHDF VPDPIHAGGL RYHGMAPLLS HVYELGFMEA
401: ISIPQIECFQ GAIQFARTEG LIPAPEPTHA IAATIREALH CRETGESKVI LTAMCGHGHF DLPAYEKYLQ GNMVDLSFEE EKIKASLANI PQVVA

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.