Factsheet for TraesCS2A01G257700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38530.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93806	Soybean	cytosol	48.54	20.92
CDX99679	Canola	cytosol	16.5	15.45
Zm00001d046676_P001	Maize	extracellular	52.43	14.48
CDY63316	Canola	cytosol	51.46	13.73
TraesCS7A01G392800.1	Wheat	plastid	58.25	12.32
Os06t0632200-02	Rice	plastid	55.34	11.7
KXG20416	Sorghum	plastid	54.37	11.34
CDX67409	Canola	plastid	52.43	11.32
CDY30314	Canola	plastid	52.43	11.32
CDY50576	Canola	plastid	52.43	11.32
VIT_14s0083g00460.t01	Wine grape	plastid	53.4	11.11
CDX74518	Canola	plastid	53.4	11.0
Bra028191.1-P	Field mustard	plastid	53.4	11.0
Bra028413.1-P	Field mustard	plastid	53.4	11.0
CDY01654	Canola	plastid	53.4	10.98
AT5G38530.1	Thale cress	plastid	53.4	10.87
GSMUA_Achr2P05390_001	Banana	plastid	52.43	10.78
PGSC0003DMT400075555	Potato	plastid	51.46	10.77
Solyc12g096190.1.1	Tomato	plastid	51.46	10.77
KRH18295	Soybean	nucleus, plastid	51.46	10.56
CDY52465	Canola	plastid	49.51	10.2
CDX99680	Canola	plastid	49.51	10.2
Bra025430.1-P	Field mustard	plastid	47.57	9.92
TraesCS7A01G308600.1	Wheat	plastid	23.3	5.11

Protein Annotations

EnsemblPlants:TraesCS2A01G257700.1	EnsemblPlantsGene:TraesCS2A01G257700	Gene3D:3.40.50.1100	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824
GO:GO:0004834	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030170	InterPro:Trp_synth_b-like	InterPro:Trypto_synt_PLP_dependent	KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	PANTHER:PTHR43565
SEG:seg	SUPFAM:SSF53686	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr2A:-:398506875..398507437

Molecular Weight (calculated)

11922.3 Da

IEP (calculated)

8.289

GRAVY (calculated)

-0.771

Length

103 amino acids

Sequence
(BLAST)

001: MPEEEEALFH VGYRRKRRRR RFSGQTRSRG RHATGIYAYD HDHTHGLTPL MKMRTLSHEF VPDPIHAGGL RCHGMTPLIS HVDELGFMEA MSIKQTECFE
101: GTD

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.