Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX99679 | Canola | cytosol | 19.57 | 90.0 |
| CDY01654 | Canola | plastid | 85.77 | 86.63 |
| Bra028191.1-P | Field mustard | plastid | 85.57 | 86.6 |
| CDX74518 | Canola | plastid | 85.57 | 86.6 |
| CDX99680 | Canola | plastid | 82.61 | 83.6 |
| CDY52465 | Canola | plastid | 82.61 | 83.6 |
| Bra025430.1-P | Field mustard | plastid | 80.43 | 82.39 |
| Zm00001d046676_P001 | Maize | extracellular | 58.5 | 79.36 |
| Solyc12g096190.1.1 | Tomato | plastid | 75.49 | 77.64 |
| PGSC0003DMT400075555 | Potato | plastid | 74.9 | 77.03 |
| VIT_14s0083g00460.t01 | Wine grape | plastid | 74.31 | 75.96 |
| KRG93806 | Soybean | cytosol | 34.59 | 73.22 |
| KRH18295 | Soybean | nucleus, plastid | 71.94 | 72.51 |
| Os06t0632200-02 | Rice | plastid | 69.76 | 72.48 |
| TraesCS7A01G392800.1 | Wheat | plastid | 69.37 | 72.07 |
| KXG20416 | Sorghum | plastid | 70.36 | 72.06 |
| HORVU7Hr1G092800.3 | Barley | plastid | 69.57 | 71.84 |
| GSMUA_Achr2P05390_001 | Banana | plastid | 70.16 | 70.86 |
| TraesCS7D01G388400.3 | Wheat | cytosol | 68.77 | 70.59 |
| TraesCS7B01G294800.1 | Wheat | mitochondrion, plastid | 67.79 | 70.43 |
| TraesCS2A01G257700.1 | Wheat | nucleus | 10.87 | 53.4 |
| AT4G27070.1 | Thale cress | plastid | 21.94 | 23.37 |
| AT5G54810.1 | Thale cress | plastid | 21.54 | 23.19 |
| AT5G28237.1 | Thale cress | mitochondrion | 20.95 | 22.8 |
Protein Annotations
| KEGG:00260+4.2.1.20 | KEGG:00400+4.2.1.20 | Gene3D:3.40.50.1100 | MapMan:35.1 | EntrezGene:833841 | ProteinID:AED94331.1 |
| ArrayExpress:AT5G38530 | EnsemblPlantsGene:AT5G38530 | RefSeq:AT5G38530 | TAIR:AT5G38530 | RefSeq:AT5G38530-TAIR-G | EnsemblPlants:AT5G38530.1 |
| TAIR:AT5G38530.1 | EMBL:AY081349 | Unigene:At.20935 | ProteinID:BAB10143.1 | EMBL:BT000255 | GO:GO:0000162 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004834 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006568 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030170 | GO:GO:0042803 |
| GO:GO:0052684 | HAMAP:MF_00133 | RefSeq:NP_198669.1 | PFAM:PF00291 | InterPro:PLP-dep | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR43565 | UniProt:Q9FFW8 | SUPFAM:SSF53686 |
| TIGRFAMs:TIGR01415 | Symbol:TSBtype2 | InterPro:Trp_synth_b-like | InterPro:Trp_synth_beta | InterPro:Trp_synth_beta/beta-like | InterPro:Trypto_synt_PLP_dependent |
| UniParc:UPI0000048BD3 | SEG:seg | : | : | : | : |
Description
TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
Coordinates
chr5:+:15423980..15426576
Molecular Weight (calculated)
55745.0 Da
IEP (calculated)
7.258
GRAVY (calculated)
-0.229
Length
506 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.