Factsheet for AT4G27070.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92783	Canola	plastid	89.47	90.04
PGSC0003DMT400037303	Potato	cytosol	77.68	90.0
Bra019075.1-P	Field mustard	plastid	89.05	89.62
CDY46668	Canola	plastid	89.05	89.62
AT5G54810.1	Thale cress	plastid	85.26	86.17
GSMUA_Achr4P07140_001	Banana	mitochondrion	75.79	83.53
KRH37954	Soybean	cytosol	26.95	83.12
Solyc10g006400.2.1	Tomato	plastid	80.21	81.41
PGSC0003DMT400002722	Potato	plastid	77.68	80.92
VIT_19s0177g00310.t01	Wine grape	plastid	77.89	80.79
Solyc07g064280.2.1	Tomato	plastid	77.47	80.7
KRG98855	Soybean	mitochondrion, plastid	79.16	79.83
EES13315	Sorghum	plastid	77.68	77.52
KRH46102	Soybean	nucleus, plastid	77.89	77.24
Zm00001d049610_P001	Maize	plastid	76.21	76.37
TraesCS7A01G308600.1	Wheat	plastid	75.37	76.17
TraesCS7B01G208700.1	Wheat	plastid	75.37	76.17
TraesCS7D01G305300.1	Wheat	plastid	75.16	75.96
Os08t0135900-01	Rice	plastid	74.53	75.16
Zm00001d024702_P001	Maize	plastid	75.37	74.74
HORVU7Hr1G073460.3	Barley	plastid	75.37	70.89
AT5G28237.1	Thale cress	mitochondrion	54.95	56.13
AT5G38530.1	Thale cress	plastid	23.37	21.94

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2	EntrezGene:828815	ProteinID:AAA32879.1
ProteinID:AEE85296.1	EMBL:AK228129	ArrayExpress:AT4G27070	EnsemblPlantsGene:AT4G27070	RefSeq:AT4G27070	TAIR:AT4G27070
RefSeq:AT4G27070-TAIR-G	EnsemblPlants:AT4G27070.1	TAIR:AT4G27070.1	EMBL:AY084334	Unigene:At.327	EMBL:BT003144
ProteinID:CAB38837.1	ProteinID:CAB79562.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006568	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0016829	HAMAP:MF_00133	RefSeq:NP_194437.1
UniProt:P25269	PFAM:PF00291	PIRSF:PIRSF001413	InterPro:PLP-dep	PO:PO:0000025	PO:PO:0000293
PO:PO:0001002	PO:PO:0001016	PO:PO:0001017	PO:PO:0025195	PO:PO:0025281	ScanProsite:PS00168
PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	UniProt:Q0WS13	SUPFAM:SSF53686	TIGRFAMs:TIGR00263	Symbol:TSB2
InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI00000013DB	SEG:seg

Description

TSB2Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WS13]

Coordinates

chr4:+:13586268..13588897

Molecular Weight (calculated)

51603.5 Da

IEP (calculated)

6.660

GRAVY (calculated)

-0.226

Length

475 amino acids

Sequence
(BLAST)

001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.