Factsheet for TraesCS7B01G208700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16481623
plastid: 16595579
plastid: 18419817
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms PMID: 16481623 doi

Y Balmer, WH Vensel, N Cai, W Manieri, P Schürmann, WJ Hurkman, BB Buchanan

Department of Plant and Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G308600.1
TraesCS7B01G208700.1
TraesCS7D01G305300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	TraesCS7A01G308600.1	AT5G54810.1	21798944
AT5G54810.1	TraesCS7B01G208700.1	AT5G54810.1	21798944
AT5G54810.1	TraesCS7D01G305300.1	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G305300.1	Wheat	plastid	99.79	99.79
TraesCS7A01G308600.1	Wheat	plastid	99.15	99.15
HORVU7Hr1G073460.3	Barley	plastid	98.09	91.29
PGSC0003DMT400037303	Potato	cytosol	74.68	85.61
Zm00001d049610_P001	Maize	plastid	85.96	85.23
EES13315	Sorghum	plastid	85.11	84.03
Os08t0135900-01	Rice	plastid	83.62	83.44
Zm00001d024702_P001	Maize	plastid	84.04	82.46
CDX82609	Canola	cytosol	51.91	81.61
CDY55463	Canola	cytosol	51.91	81.61
GSMUA_Achr4P07140_001	Banana	mitochondrion	72.98	79.58
CDY17275	Canola	plastid	76.81	77.63
Bra002954.1-P	Field mustard	plastid	76.81	77.63
CDY19860	Canola	plastid	76.81	77.63
VIT_19s0177g00310.t01	Wine grape	plastid	75.53	77.51
PGSC0003DMT400002722	Potato	plastid	74.68	76.97
Solyc07g064280.2.1	Tomato	plastid	74.47	76.75
CDY46668	Canola	plastid	76.38	76.06
Bra019075.1-P	Field mustard	plastid	76.38	76.06
Solyc10g006400.2.1	Tomato	plastid	75.53	75.85
CDX92783	Canola	plastid	76.17	75.85
AT4G27070.1	Thale cress	plastid	76.17	75.37
AT5G54810.1	Thale cress	plastid	74.68	74.68
KRG98855	Soybean	mitochondrion, plastid	74.26	74.1
KRH37954	Soybean	cytosol	24.26	74.03
KRH46102	Soybean	nucleus, plastid	74.47	73.07
CDY53670	Canola	cytosol	16.81	66.95
CDY56040	Canola	plastid	35.11	54.1
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	23.4	22.59

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0004834	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413	InterPro:PLP-dep	ScanProsite:PS00168
PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	SUPFAM:SSF53686	TIGRFAMs:TIGR00263	EnsemblPlantsGene:TraesCS7B01G208700	EnsemblPlants:TraesCS7B01G208700.1
InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	TIGR:cd06446	SEG:seg

Description

No Description!

Coordinates

chr7B:-:381835489..381838897

Molecular Weight (calculated)

50267.1 Da

IEP (calculated)

6.798

GRAVY (calculated)

-0.162

Length

470 amino acids

Sequence
(BLAST)

001: MAASAIRNPS PAAAVAAPLP SRAVLRMVTP SARRGASVVA SASMRPAKAV AAEAPSPVAE RVNGAEVAGA GIARPDALGR FGKFGGKYVP ETLMHALTEL
101: EAAFHALADD EDFQKELDGI LKDYVGRESP LYFAERLTEH YKRADGTGPL IYLKREDLNH TGAHKINNAV AQALLAKKLG KQRIIAETGA GQHGVATATV
201: CARFGLQCII YMGAQDMERQ ALNVFRMKLL GAEVRPVHSG TATLKDATSE AIRDWVTNVE TTHYILGSVA GPHPYPMMVR EFHKVIGKET RRQAMDKWGG
301: KPDVLVACVG GGSNAMGLFH EFVDDQDVRL IGVEAAGHGV DTDKHAATLT KGEVGVLHGS LSYVLQDADG QVIEPHSISA GLDYPGVGPE HSFLRDIGRA
401: EYDSVTDQEA LDAFKRTSRL EGIIPALETS HALAYLEKLC PTLPDGVRVV LNCSGRGDKD VHTASKYLEV

Best Arabidopsis Sequence Match ( AT4G27070.1 )
(BLAST)

001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV

Arabidopsis Description

TSB2Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WS13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.