Factsheet for GSMUA_Achr4P07140_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P07140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	GSMUA_Achr4P07140_001	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037303	Potato	cytosol	82.6	86.83
KRH37954	Soybean	cytosol	29.93	83.77
VIT_19s0177g00310.t01	Wine grape	plastid	83.53	78.6
PGSC0003DMT400002722	Potato	plastid	82.83	78.29
Solyc07g064280.2.1	Tomato	plastid	82.83	78.29
Solyc10g006400.2.1	Tomato	plastid	83.53	76.92
KRG98855	Soybean	mitochondrion, plastid	83.99	76.86
KRH46102	Soybean	nucleus, plastid	84.92	76.41
AT4G27070.1	Thale cress	plastid	83.53	75.79
AT5G54810.1	Thale cress	plastid	82.13	75.32
Bra026381.1-P	Field mustard	cytosol	17.17	73.27
TraesCS7D01G305300.1	Wheat	plastid	79.81	73.19
TraesCS7A01G308600.1	Wheat	plastid	79.81	73.19
Zm00001d049610_P001	Maize	plastid	80.28	73.0
TraesCS7B01G208700.1	Wheat	plastid	79.58	72.98
EES13315	Sorghum	plastid	80.51	72.9
Os08t0135900-01	Rice	plastid	79.58	72.82
Zm00001d024702_P001	Maize	plastid	80.74	72.65
CDX89281	Canola	cytosol	16.94	72.28
HORVU7Hr1G073460.3	Barley	plastid	79.81	68.12
GSMUA_Achr2P05390_001	Banana	plastid	26.22	22.55

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0004834	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009073	GO:GO:0009987	GO:GO:0016829	EnsemblPlantsGene:GSMUA_Achr4G07140_001	EnsemblPlants:GSMUA_Achr4P07140_001
EnsemblPlants:GSMUA_Achr4T07140_001	UniProt:M0SLT1	HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413	InterPro:PLP-dep
ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	SUPFAM:SSF53686	TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS
InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000296229E	SEG:seg	:

Description

Tryptophan synthase beta chain 2, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G07140_001]

Coordinates

chr4:-:5290264..5295139

Molecular Weight (calculated)

47163.5 Da

IEP (calculated)

7.126

GRAVY (calculated)

-0.266

Length

431 amino acids

Sequence
(BLAST)

001: MKLTRQLPQW LLPRLPSSET LTSVSPSRRR RPSSAPDPFG RFGRFGGKYV PETLMYALSE LEAAFWAVSK DEDFQKELDG ILKDYVGRES PLYFAERLTD
101: HYRRPNGEGP HIYLKREDLN HTGAHKINNA VAQALLAKKL GKKRIIAETG AGQHGVATAT VCARFGLECI VYMGAQDMER QALNVFRMRL LGAEVRAVHS
201: GTATLKDATS EAIRDWVTNV ETTHYILGSV AGPHPYPMMV REFHAVIGKE TRKQALEKWG GKPDVLVACV GGGSNAMGLF HEFIDDTDVR LVGVEAAGFG
301: LDSGKHAATL TKGEVGVLHG AMSYLLQDDD GQIIEPHSIS AGLDYPGVGP EHSYLKDLGR AEYNSVTDQE ALEAFKRVSR LEGIIPALET SHALAHLEVL
401: CPTLPNGTKV VVCCSGRGDK DVQTAIKHLQ L

Best Arabidopsis Sequence Match ( AT4G27070.1 )
(BLAST)

001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV

Arabidopsis Description

TSB2Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WS13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.