Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55463 | Canola | cytosol | 57.66 | 90.64 |
| CDX82609 | Canola | cytosol | 57.45 | 90.3 |
| PGSC0003DMT400037303 | Potato | cytosol | 78.51 | 90.0 |
| Bra002954.1-P | Field mustard | plastid | 87.66 | 88.6 |
| CDY17275 | Canola | plastid | 87.66 | 88.6 |
| CDY19860 | Canola | plastid | 87.23 | 88.17 |
| AT4G27070.1 | Thale cress | plastid | 86.17 | 85.26 |
| GSMUA_Achr4P07140_001 | Banana | mitochondrion | 75.32 | 82.13 |
| KRH37954 | Soybean | cytosol | 26.6 | 81.17 |
| PGSC0003DMT400002722 | Potato | plastid | 78.51 | 80.92 |
| VIT_19s0177g00310.t01 | Wine grape | plastid | 78.72 | 80.79 |
| Solyc10g006400.2.1 | Tomato | plastid | 80.21 | 80.56 |
| Solyc07g064280.2.1 | Tomato | plastid | 77.87 | 80.26 |
| KRG98855 | Soybean | mitochondrion, plastid | 79.36 | 79.19 |
| KRH46102 | Soybean | nucleus, plastid | 78.09 | 76.62 |
| EES13315 | Sorghum | plastid | 77.45 | 76.47 |
| Zm00001d049610_P001 | Maize | plastid | 77.02 | 76.37 |
| Zm00001d024702_P001 | Maize | plastid | 77.02 | 75.57 |
| TraesCS7A01G308600.1 | Wheat | plastid | 74.89 | 74.89 |
| TraesCS7D01G305300.1 | Wheat | plastid | 74.89 | 74.89 |
| Os08t0135900-01 | Rice | plastid | 74.89 | 74.73 |
| TraesCS7B01G208700.1 | Wheat | plastid | 74.68 | 74.68 |
| CDY53670 | Canola | cytosol | 18.72 | 74.58 |
| HORVU7Hr1G073460.3 | Barley | plastid | 75.96 | 70.69 |
| CDY56040 | Canola | plastid | 39.57 | 60.98 |
| AT5G28237.1 | Thale cress | mitochondrion | 55.74 | 56.34 |
| AT5G38530.1 | Thale cress | plastid | 23.19 | 21.54 |
Protein Annotations
| KEGG:00260+4.2.1.20 | KEGG:00400+4.2.1.20 | Gene3D:3.40.50.1100 | MapMan:4.1.5.3.5.2 | EntrezGene:835571 | ProteinID:AAA32878.1 |
| ProteinID:AED96543.1 | EMBL:AF367264 | EMBL:AK227168 | ArrayExpress:AT5G54810 | EnsemblPlantsGene:AT5G54810 | RefSeq:AT5G54810 |
| TAIR:AT5G54810 | RefSeq:AT5G54810-TAIR-G | EnsemblPlants:AT5G54810.1 | TAIR:AT5G54810.1 | EMBL:AY087382 | EMBL:AY133620 |
| Unigene:At.23506 | ProteinID:BAB08760.1 | GO:GO:0000162 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004834 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005886 | GO:GO:0006568 | GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008652 | GO:GO:0009058 | GO:GO:0009073 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 |
| GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009684 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016829 |
| GO:GO:0019904 | HAMAP:MF_00133 | RefSeq:NP_200292.1 | UniProt:P14671 | PFAM:PF00291 | PIRSF:PIRSF001413 |
| InterPro:PLP-dep | PO:PO:0000293 | PO:PO:0009005 | ScanProsite:PS00168 | PANTHER:PTHR42882 | PANTHER:PTHR42882:SF3 |
| UniProt:Q0WUI8 | SUPFAM:SSF53686 | TIGRFAMs:TIGR00263 | Symbol:TSB1 | InterPro:Trp_synth_b_CS | InterPro:Trp_synth_beta |
| InterPro:Trp_synth_beta/beta-like | InterPro:Trypto_synt_PLP_dependent | UniParc:UPI0000000AB6 | SEG:seg | : | : |
Description
TSB1Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUI8]
Coordinates
chr5:-:22264594..22266902
Molecular Weight (calculated)
50928.6 Da
IEP (calculated)
6.836
GRAVY (calculated)
-0.205
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASGTSATF RASVSSAPSS SSQLTHLKSP FKAVKYTPLP SSRSKSSSFS VSCTIAKDPP VLMAAGSDPA LWQRPDSFGR FGKFGGKYVP ETLMHALSEL
101: ESAFYALATD DDFQRELAGI LKDYVGRESP LYFAERLTEH YRRENGEGPL IYLKREDLNH TGAHKINNAV AQALLAKRLG KKRIIAETGA GQHGVATATV
201: CARFGLECII YMGAQDMERQ ALNVFRMRLL GAEVRGVHSG TATLKDATSE AIRDWVTNVE TTHYILGSVA GPHPYPMMVR DFHAVIGKET RKQALEKWGG
301: KPDVLVACVG GGSNAMGLFH EFVNDTEVRM IGVEAAGFGL DSGKHAATLT KGDVGVLHGA MSYLLQDDDG QIIEPHSISA GLDYPGVGPE HSFFKDMGRA
401: EYYSITDEEA LEAFKRVSRL EGIIPALETS HALAYLEKLC PTLSDGTRVV LNFSGRGDKD VQTVAKYLDV
101: ESAFYALATD DDFQRELAGI LKDYVGRESP LYFAERLTEH YRRENGEGPL IYLKREDLNH TGAHKINNAV AQALLAKRLG KKRIIAETGA GQHGVATATV
201: CARFGLECII YMGAQDMERQ ALNVFRMRLL GAEVRGVHSG TATLKDATSE AIRDWVTNVE TTHYILGSVA GPHPYPMMVR DFHAVIGKET RKQALEKWGG
301: KPDVLVACVG GGSNAMGLFH EFVNDTEVRM IGVEAAGFGL DSGKHAATLT KGDVGVLHGA MSYLLQDDDG QIIEPHSISA GLDYPGVGPE HSFFKDMGRA
401: EYYSITDEEA LEAFKRVSRL EGIIPALETS HALAYLEKLC PTLSDGTRVV LNFSGRGDKD VQTVAKYLDV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.