Factsheet for PGSC0003DMT400002722

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002722
PGSC0003DMT400037303

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	PGSC0003DMT400002722	AT5G54810.1	21798944
AT5G54810.1	PGSC0003DMT400037303	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g064280.2.1	Tomato	plastid	97.59	97.59
PGSC0003DMT400037303	Potato	cytosol	84.65	94.15
KRH37954	Soybean	cytosol	29.61	87.66
GSMUA_Achr4P07140_001	Banana	mitochondrion	78.29	82.83
VIT_19s0177g00310.t01	Wine grape	plastid	82.46	82.1
KRG98855	Soybean	mitochondrion, plastid	82.02	79.41
AT5G54810.1	Thale cress	plastid	80.92	78.51
KRH46102	Soybean	nucleus, plastid	82.02	78.08
AT4G27070.1	Thale cress	plastid	80.92	77.68
Zm00001d049610_P001	Maize	plastid	78.51	75.53
EES13315	Sorghum	plastid	78.73	75.42
Os08t0135900-01	Rice	plastid	77.19	74.73
TraesCS7A01G308600.1	Wheat	plastid	76.97	74.68
TraesCS7B01G208700.1	Wheat	plastid	76.97	74.68
TraesCS7D01G305300.1	Wheat	plastid	76.97	74.68
Zm00001d024702_P001	Maize	plastid	77.63	73.9
Bra026381.1-P	Field mustard	cytosol	16.01	72.28
CDX89281	Canola	cytosol	15.79	71.29
HORVU7Hr1G073460.3	Barley	plastid	77.19	69.7
PGSC0003DMT400029363	Potato	plastid	56.36	55.99
PGSC0003DMT400074916	Potato	cytosol	10.96	50.51
PGSC0003DMT400075555	Potato	plastid	24.12	22.36

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	EntrezGene:102578868	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2	GO:GO:0000162
GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009987	GO:GO:0016829	UniProt:M0ZKI7
HAMAP:MF_00133	PFAM:PF00291	EnsemblPlantsGene:PGSC0003DMG400001048	PGSC:PGSC0003DMG400001048	EnsemblPlants:PGSC0003DMT400002722	PIRSF:PIRSF001413
InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	SUPFAM:SSF53686	TIGRFAMs:TIGR00263
InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0002968642	RefSeq:XP_006366042.1

Description

Tryptophan synthase beta subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400001048]

Coordinates

chr7:-:54553115..54556771

Molecular Weight (calculated)

49620.4 Da

IEP (calculated)

6.957

GRAVY (calculated)

-0.215

Length

456 amino acids

Sequence
(BLAST)

001: MAFSSPSQIA LPLPKPHRFS SSSQSQIPFK FIKITSSPTN PPAIACVLTG KSMDAAAIQR PDSFGRFGKF GGKYVPETLM HALDELETAF NSLATDQDFQ
101: KELDGILRDY VGRESPLYFA ERLTEHYKRP DGEGSMIYLK REDLNHTGAH KINNAVAQAL LAKRLGKKRI IAETGAGQHG VATATVCARF GLDCVIYMGA
201: QDMERQALNV FRMRLLGAEV RAVHSGTATL KDATSEAIRD WVTNVETTHY ILGSVAGPHP YPMMVRDFHA VIGKETRKQS LEKWGGKPDV LVACVGGGSN
301: AMGLFHEFVD DKDVRLIGVE AAGFGLDSGK HAATLTKGEV GVLHGAMSYL LQDEDGQIVE PHSISAGLDY PGVGPEHSFL KDLGRAEYYS ITDEEALEAF
401: KRLSRLEGII PALETSHALA YLEKLCPTLP NGTKVVLNCS GRGDKDVQTA IKYLKV

Best Arabidopsis Sequence Match ( AT5G54810.1 )
(BLAST)

001: MAASGTSATF RASVSSAPSS SSQLTHLKSP FKAVKYTPLP SSRSKSSSFS VSCTIAKDPP VLMAAGSDPA LWQRPDSFGR FGKFGGKYVP ETLMHALSEL
101: ESAFYALATD DDFQRELAGI LKDYVGRESP LYFAERLTEH YRRENGEGPL IYLKREDLNH TGAHKINNAV AQALLAKRLG KKRIIAETGA GQHGVATATV
201: CARFGLECII YMGAQDMERQ ALNVFRMRLL GAEVRGVHSG TATLKDATSE AIRDWVTNVE TTHYILGSVA GPHPYPMMVR DFHAVIGKET RKQALEKWGG
301: KPDVLVACVG GGSNAMGLFH EFVNDTEVRM IGVEAAGFGL DSGKHAATLT KGDVGVLHGA MSYLLQDDDG QIIEPHSISA GLDYPGVGPE HSFFKDMGRA
401: EYYSITDEEA LEAFKRVSRL EGIIPALETS HALAYLEKLC PTLSDGTRVV LNFSGRGDKD VQTVAKYLDV

Arabidopsis Description

TSB1Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.