Factsheet for PGSC0003DMT400075555

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096190.1.1	Tomato	plastid	88.41	88.41
CDY63316	Canola	cytosol	65.85	83.94
CDX99679	Canola	cytosol	18.29	81.82
Zm00001d046676_P001	Maize	extracellular	60.77	80.16
VIT_14s0083g00460.t01	Wine grape	plastid	78.66	78.18
Bra028413.1-P	Field mustard	plastid	77.24	76.0
CDX74518	Canola	plastid	77.03	75.8
CDY01654	Canola	plastid	77.03	75.65
Bra028191.1-P	Field mustard	plastid	76.83	75.6
KRG93806	Soybean	cytosol	36.59	75.31
KRH18295	Soybean	nucleus, plastid	76.83	75.3
AT5G38530.1	Thale cress	plastid	77.03	74.9
CDX67409	Canola	plastid	72.36	74.63
CDY30314	Canola	plastid	72.15	74.42
CDY50576	Canola	plastid	72.15	74.42
CDY52465	Canola	plastid	74.8	73.6
CDX99680	Canola	plastid	74.8	73.6
TraesCS7A01G392800.1	Wheat	plastid	71.75	72.48
GSMUA_Achr2P05390_001	Banana	plastid	73.78	72.46
KXG20416	Sorghum	plastid	72.56	72.27
Bra025430.1-P	Field mustard	plastid	72.36	72.06
HORVU7Hr1G092800.3	Barley	plastid	71.54	71.84
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	70.94	71.66
TraesCS7D01G388400.3	Wheat	cytosol	71.54	71.4
Os06t0632200-02	Rice	plastid	70.33	71.05
TraesCS2A01G257700.1	Wheat	nucleus	10.77	51.46
PGSC0003DMT400037303	Potato	cytosol	21.95	26.34
PGSC0003DMT400002722	Potato	plastid	22.36	24.12
PGSC0003DMT400029363	Potato	plastid	19.31	20.7
PGSC0003DMT400074916	Potato	cytosol	2.44	12.12

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	EntrezGene:102588644	Gene3D:3.40.50.1100	MapMan:35.1	GO:GO:0000162
GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0005488	GO:GO:0006568	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030170	UniProt:M1CVD2	HAMAP:MF_00133
PFAM:PF00291	EnsemblPlantsGene:PGSC0003DMG400029380	PGSC:PGSC0003DMG400029380	EnsemblPlants:PGSC0003DMT400075555	PIRSF:PIRSF001413	PIRSF:PIRSF500824
InterPro:PLP-dep	PANTHER:PTHR43565	SUPFAM:SSF53686	TIGRFAMs:TIGR01415	InterPro:Trp_synth_b-like	InterPro:Trp_synth_beta
InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000295511A	RefSeq:XP_006342484.1	:	:

Description

Tryptophan synthase beta chain [Source:PGSC_GENE;Acc:PGSC0003DMG400029380]

Coordinates

chr12:+:57950911..57954167

Molecular Weight (calculated)

54132.4 Da

IEP (calculated)

7.550

GRAVY (calculated)

-0.169

Length

492 amino acids

Sequence
(BLAST)

001: MALSLPNLFP KGDAYGTKYF EIKTKPSHLK LSFSYRARVK AALNSRSSSV EIPRQWYNLV ADLPIKPPPS LHPKTFQPIK PEDLSPLFCD ELIKQEASVE
101: QFIDIPEEVL DVYSLWRPTP LIRAKRLEKL LDTPARIYYK YEGGSPAGSH KPNSAVPQAW YNKMGNVKNV VTETGAGQWG SALSFACSLF GLNCEVWQVR
201: ASFDQKPYRK MMMQTWGAKV HPSPSDLTEA GRAILQIDPS SPGSLGIAIS EAVEVAAKNA DTKYCLGSVL NHVLLHQTVI GEECIKQMED FGETPDVIIG
301: CTGGGSNFAG LAFPFIREKL KGKINPLFRA VEPTACPSLT KGVYAYDYGD TAGMTPLMKM HTLGHDFIPD PIHSGGLRYH GMAPLISHVY ELGFMEAISI
401: PQIECFQGAI QFARSEGLIP APEPTHAIAA TIREALRCKE TGESKVILMA MCGHGHFDLP SYDKYLQGSL VDLSFSEEKI KASLAKIPRP VS

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.