Factsheet for Zm00001d046676_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plastid

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38530.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT5G38530.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT5G38530.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT5G38530.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT5G38530.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT5G38530.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT5G38530.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT5G38530.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63316	Canola	cytosol	79.89	77.2
KXG20416	Sorghum	plastid	97.86	73.89
CDX99679	Canola	cytosol	21.45	72.73
KRG93806	Soybean	cytosol	45.04	70.29
Os06t0632200-02	Rice	plastid	89.81	68.79
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	89.01	68.17
TraesCS7D01G388400.3	Wheat	cytosol	89.54	67.75
HORVU7Hr1G092800.3	Barley	plastid	88.74	67.55
GSMUA_Achr2P05390_001	Banana	plastid	84.18	62.67
PGSC0003DMT400075555	Potato	plastid	80.16	60.77
Solyc12g096190.1.1	Tomato	plastid	79.89	60.57
VIT_14s0083g00460.t01	Wine grape	plastid	79.89	60.2
Bra028413.1-P	Field mustard	plastid	79.89	59.6
KRH18295	Soybean	nucleus, plastid	80.16	59.56
Bra028191.1-P	Field mustard	plastid	79.36	59.2
CDY01654	Canola	plastid	79.36	59.08
CDX74518	Canola	plastid	79.09	59.0
AT5G38530.1	Thale cress	plastid	79.36	58.5
CDY52465	Canola	plastid	77.75	58.0
CDX99680	Canola	plastid	77.48	57.8
CDX67409	Canola	plastid	73.73	57.65
CDY30314	Canola	plastid	73.73	57.65
CDY50576	Canola	plastid	73.46	57.44
Bra025430.1-P	Field mustard	plastid	75.34	56.88
TraesCS2A01G257700.1	Wheat	nucleus	14.48	52.43
Zm00001d049610_P001	Maize	plastid	28.42	22.36
Zm00001d024702_P001	Maize	plastid	28.42	22.13

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	UniProt:A0A1D6P4E8	ProteinID:AQL04832.1
GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030170	PFAM:PF00291	PIRSF:PIRSF001413
PIRSF:PIRSF500824	InterPro:PLP-dep	PANTHER:PTHR43565	SUPFAM:SSF53686	TIGRFAMs:TIGR01415	InterPro:Trp_synth_b-like
InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000843C01B	EnsemblPlantsGene:Zm00001d046676	EnsemblPlants:Zm00001d046676_P001	EnsemblPlants:Zm00001d046676_T001
SEG:seg	:	:	:	:	:

Description

tryptophan synthase beta type 2

Coordinates

chr9:+:101918009..101919782

Molecular Weight (calculated)

39890.0 Da

IEP (calculated)

6.832

GRAVY (calculated)

-0.017

Length

373 amino acids

Sequence
(BLAST)

001: MLPTFRARRL EKLLGTPAKI YYKYEGTSPA GSHKPNTAVP QAWYNAAAGV KNVVTETGAG QWGSALSFAS SLFGLNCEVW QVRASFDQKP YRRLMMETWG
101: AKVHPSPSTA TEAGKRILEA DPSSPGSLGI AISEAVEVAA TSADTKYCLG SVLNHVLLHQ TVIGEECLEQ LAALGETPDV VIGCTGGGSN FGGLAFPFLR
201: EKLRGKMSPA FRAVEPAACP TLTKGVYAYD FGDTAGLTPL MKMHTLGHGF VPDPIHAGGL RYHGMAPLIS HVYELGFMDA VAIQQTECFQ AALQFARTEG
301: IIPAPEPTHA IAAAIREALE CKRTGEEKVI LMAMCGHGHF DLAAYEKYLR GDMVDLSHPA DKLEASLAAV PKV

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.