CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38530.1	KRH22291	AT2G42580.1	19000166
AT5G38530.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99679	Canola	cytosol	28.03	60.91
TraesCS2A01G257700.1	Wheat	nucleus	20.92	48.54
CDY63316	Canola	cytosol	73.22	45.34
Zm00001d046676_P001	Maize	extracellular	70.29	45.04
KRH18295	Soybean	nucleus, plastid	85.36	40.64
VIT_14s0083g00460.t01	Wine grape	plastid	76.57	36.97
PGSC0003DMT400075555	Potato	plastid	75.31	36.59
Solyc12g096190.1.1	Tomato	plastid	74.9	36.38
Bra028191.1-P	Field mustard	plastid	74.48	35.6
CDY01654	Canola	plastid	74.48	35.53
Bra028413.1-P	Field mustard	plastid	74.06	35.4
CDX74518	Canola	plastid	74.06	35.4
CDY52465	Canola	plastid	72.8	34.8
CDX99680	Canola	plastid	72.38	34.6
AT5G38530.1	Thale cress	plastid	73.22	34.59
GSMUA_Achr2P05390_001	Banana	plastid	71.97	34.33
KXG20416	Sorghum	plastid	70.71	34.21
CDY30314	Canola	plastid	68.2	34.17
CDX67409	Canola	plastid	68.2	34.17
TraesCS7A01G392800.1	Wheat	plastid	69.46	34.09
HORVU7Hr1G092800.3	Barley	plastid	69.87	34.08
CDY50576	Canola	plastid	67.78	33.96
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	68.62	33.68
Os06t0632200-02	Rice	plastid	68.2	33.47
TraesCS7D01G388400.3	Wheat	cytosol	69.04	33.47
Bra025430.1-P	Field mustard	plastid	68.2	33.0
KRH37954	Soybean	cytosol	17.99	27.92
KRG98855	Soybean	mitochondrion, plastid	30.13	15.29
KRH46102	Soybean	nucleus, plastid	29.71	14.82
KRH27603	Soybean	mitochondrion	22.18	11.47

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.2	UniProt:A0A0R0EUP5	EMBL:ACUP02011629
EnsemblPlantsGene:GLYMA_19G042400	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030170	EnsemblPlants:KRG93806
ProteinID:KRG93806	ProteinID:KRG93806.1	PFAM:PF00291	InterPro:PLP-dep	PANTHER:PTHR43565	SUPFAM:SSF53686
InterPro:Trp_synth_b-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0006EE14B2	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:6177407..6180442

Molecular Weight (calculated)

25972.6 Da

IEP (calculated)

7.168

GRAVY (calculated)

-0.028

Length

239 amino acids

Sequence
(BLAST)

001: MLLKLGITIS EAVEVAAKNA YSKYCLHNHI LLHHSVIGEE WIKQMEAIGE TPDVIKGCTG GGSNFAGLSF PFLREKLNKK INPVIRAVEP AACPSLTKGV
101: YTYDYGDTAG MTPLIKMHTL GHDFVPDPIH AGGLRYHGMA PLISHVFDLG LMEAIAIPQT ECLGAIQFAR SEGLIPASEP THAIAATIRE AIRCRETGEA
201: KVILTAMCGH GHFDLPAYEK YLQVKKDNFV GNENAKHKG

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.