CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30314	Canola	plastid	98.74	98.74
CDX67409	Canola	plastid	98.32	98.32
Bra028413.1-P	Field mustard	plastid	98.11	93.6
CDY63316	Canola	cytosol	71.91	88.86
CDX99679	Canola	cytosol	20.13	87.27
CDX74518	Canola	plastid	91.4	87.2
CDY01654	Canola	plastid	90.15	85.83
CDY52465	Canola	plastid	87.21	83.2
CDX99680	Canola	plastid	87.0	83.0
Solyc12g096190.1.1	Tomato	plastid	75.89	73.58
Zm00001d046676_P001	Maize	extracellular	57.44	73.46
PGSC0003DMT400075555	Potato	plastid	74.42	72.15
VIT_14s0083g00460.t01	Wine grape	plastid	74.42	71.72
KRH18295	Soybean	nucleus, plastid	71.91	68.33
KRG93806	Soybean	cytosol	33.96	67.78
Os06t0632200-02	Rice	plastid	68.97	67.56
KXG20416	Sorghum	plastid	69.81	67.41
TraesCS7A01G392800.1	Wheat	plastid	68.13	66.74
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	67.92	66.53
HORVU7Hr1G092800.3	Barley	plastid	67.92	66.12
GSMUA_Achr2P05390_001	Banana	plastid	69.18	65.87
TraesCS7D01G388400.3	Wheat	cytosol	67.71	65.52
TraesCS2A01G257700.1	Wheat	nucleus	11.32	52.43
CDY05419	Canola	cytosol	5.87	29.47
CDY57048	Canola	cytosol	7.13	26.98
CDY72593	Canola	cytosol, plastid	15.09	26.97
CDX89281	Canola	cytosol	5.45	25.74
CDY55463	Canola	cytosol	15.93	25.42
CDX82609	Canola	cytosol	15.72	25.08
CDY21004	Canola	mitochondrion	16.35	23.21
CDY30322	Canola	plastid	21.38	23.13
CDY53670	Canola	cytosol	5.66	22.88
CDY17275	Canola	plastid	21.59	22.15
CDY19860	Canola	plastid	21.59	22.15
CDX92783	Canola	plastid	21.8	22.03
CDY46668	Canola	plastid	21.8	22.03
CDY49790	Canola	mitochondrion	20.34	20.82
CDY56040	Canola	plastid	13.0	20.33

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	GO:A0A078IKQ9	UniProt:A0A078IKQ9
EnsemblPlants:CDY50576	ProteinID:CDY50576	ProteinID:CDY50576.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824
GO:GO:0004834	GO:GO:0005488	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00097018001	PFAM:PF00291	PIRSF:PIRSF001413	PIRSF:PIRSF500824
InterPro:PLP-dep	PANTHER:PTHR43565	SUPFAM:SSF53686	InterPro:Trp_synth_b-like	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like
InterPro:Trypto_synt_PLP_dependent	UniPathway:UPA00035	UniParc:UPI0004EE00CF	SEG:seg	:	:

Description

BnaA06g13600DBnaA06g13600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKQ9]

Coordinates

chrLK032923:-:45992..52963

Molecular Weight (calculated)

52477.0 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.226

Length

477 amino acids

Sequence
(BLAST)

001: MTSQLLLPPN PFTRPVSAKV FLTDDDLTLK RKSNQATRVS NGFSLRAKAA LRSNHSSSVE IPNQWYNLIA DLSVKPPPPL HPKTLEPIKP EDLSHLFPNE
101: LIKQEATLER FIDIPEEVLE IYKLWRPTPL IRAKRLEKLL QTPARIYFKY EGSSPAGSHK PNTAVPQAYY NAKEGVKNVV TETGAGQWGS SLAFASSLFG
201: LDCEVWQVAN SYHQKPYRRL MMQTWGAKVH PSPSDLTEAG RKILESDPSS PGSLGIAISE AVETVIGEEC IKQMEDFGET PDVIIGCTGG GSNFAGLSFP
301: FIREKIKGNI SPVIRAVEPS ACPSLTKGVY AYDFGDTAGL TPLMKMHTLG HDFIPDPIHA GGLRYHGMAP LISHVYEQGF MEAISIPQIE CFQGAIEFAR
401: AEGIIPAPEP THAIAATIRE ALRCKETGEA KVILMAMCGH GHFDLSSYDK YLKGELVDLS FSEDKIRESL SKVPHVV

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.