CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05419	Canola	cytosol	21.43	75.79
CDY57048	Canola	cytosol	27.08	72.22
CDY72593	Canola	cytosol, plastid	57.14	71.91
CDY55463	Canola	cytosol	54.17	60.87
CDX82609	Canola	cytosol	53.57	60.2
CDY30322	Canola	plastid	78.27	59.64
Bra016830.1-P	Field mustard	plastid	77.68	57.74
CDY49790	Canola	mitochondrion	79.17	57.08
CDX89281	Canola	cytosol	16.07	53.47
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	15.48	52.0
PGSC0003DMT400074916	Potato	cytosol	14.58	49.49
CDY53670	Canola	cytosol	16.67	47.46
VIT_10s0116g00710.t01	Wine grape	plastid	64.29	45.28
PGSC0003DMT400029363	Potato	plastid	61.61	45.1
CDY56040	Canola	plastid	40.77	44.92
Solyc10g005320.2.1	Tomato	plastid	60.71	44.35
KRH27603	Soybean	mitochondrion	58.63	42.64
Solyc10g018390.1.1	Tomato	cytosol	57.74	42.64
CDY17275	Canola	plastid	56.55	40.86
CDY46668	Canola	plastid	57.14	40.68
CDX92783	Canola	plastid	57.14	40.68
CDY19860	Canola	plastid	56.25	40.65
Solyc10g018380.1.1	Tomato	cytosol	20.24	32.54
CDY63316	Canola	cytosol	25.3	22.02
CDX99679	Canola	cytosol	6.85	20.91
HORVU4Hr1G035330.1	Barley	plastid	7.14	17.65
CDX74518	Canola	plastid	24.7	16.6
CDY01654	Canola	plastid	24.7	16.57
CDY50576	Canola	plastid	23.21	16.35
CDY30314	Canola	plastid	23.21	16.35
CDX67409	Canola	plastid	23.21	16.35
CDY52465	Canola	plastid	24.11	16.2
CDX99680	Canola	plastid	24.11	16.2

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:50.4.2	GO:A0A078G6E1	UniProt:A0A078G6E1
EnsemblPlants:CDY21004	ProteinID:CDY21004	ProteinID:CDY21004.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824
GO:GO:0004834	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00015160001	PFAM:PF00291	PIRSF:PIRSF001413	InterPro:PLP-dep	PFscan:PS51257	PANTHER:PTHR42882
PANTHER:PTHR42882:SF2	SUPFAM:SSF53686	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniPathway:UPA00035
UniParc:UPI0004EEE6E3	:	:	:	:	:

Description

BnaA08g25210DBnaA08g25210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6E1]

Coordinates

chrLK032115:+:285490..287374

Molecular Weight (calculated)

36031.5 Da

IEP (calculated)

6.667

GRAVY (calculated)

0.074

Length

336 amino acids

Sequence
(BLAST)

001: MIARRLGCSR VVAATGAGQH GVATAAACAK LCLECTVFMG TTDIEKQSSN VLSMKLLGAQ KSFITNSFSE MKILLQIISP DTIKYSSTNI KFVSSLEGTF
101: QDASSEAIRN WVENLETTYY LSGTVVGPHP SPVMVREFQS VIGKETRRQA KRLWGGKPDV LVACVGSGSN ALGLFHEFVG DEDVRLVGVE AAGLGLDSGK
201: HSATLAVGDV GVYHGSMSYL LQDDQGQILR PHSIGPHICL IGRGLEYPGV GPEISFLKET GRVEFYTATD KEAIQACMLL SRLEGIIPAL EASHALAFLD
301: KLVPILHDGA KVIVNCSGRG DKDIDTLIQR GMSHYT

Best Arabidopsis Sequence Match ( AT4G27070.1 )
(BLAST)

001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV

Arabidopsis Description

TSB2Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WS13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.