Factsheet for Bra016830.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21004	Canola	mitochondrion	57.74	77.68
Bra016829.1-P	Field mustard	plastid	74.78	72.84
Bra037230.1-P	Field mustard	plastid	65.93	67.57
VIT_10s0116g00710.t01	Wine grape	plastid	59.29	56.18
PGSC0003DMT400029363	Potato	plastid	55.53	54.68
KRH27603	Soybean	mitochondrion	55.31	54.11
Solyc10g005320.2.1	Tomato	plastid	53.1	52.17
Solyc10g018390.1.1	Tomato	cytosol	51.99	51.65
Bra002954.1-P	Field mustard	plastid	52.65	51.18
Bra019075.1-P	Field mustard	plastid	52.88	50.64
Solyc10g018380.1.1	Tomato	cytosol	22.35	48.33
Bra026381.1-P	Field mustard	cytosol	8.85	39.6
PGSC0003DMT400074916	Potato	cytosol	7.74	35.35
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	7.3	33.0
Bra028413.1-P	Field mustard	plastid	22.35	20.2
Bra028191.1-P	Field mustard	plastid	22.12	20.0
Bra025430.1-P	Field mustard	plastid	21.46	19.64
HORVU4Hr1G035330.1	Barley	plastid	5.53	18.38

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:50.4.2	EnsemblPlantsGene:Bra016830	EnsemblPlants:Bra016830.1
EnsemblPlants:Bra016830.1-P	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0006568
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:M4DK02	HAMAP:MF_00133
PFAM:PF00291	PIRSF:PIRSF001413	InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF2
SUPFAM:SSF53686	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0002546403
SEG:seg	:	:	:	:	:

Description

AT5G28237 (E=8e-148) | tryptophan synthase, beta subunit, putative

Coordinates

chrA08:-:20182075..20184820

Molecular Weight (calculated)

49059.9 Da

IEP (calculated)

8.825

GRAVY (calculated)

-0.189

Length

452 amino acids

Sequence
(BLAST)

001: MSSTKIQLRW QPLPRVPARN HRMINSVVFG VPIKSHHRVS DVLSRTSGPS FGSVTSVSVR TNARPFLRGD GNGRFGRFGG KFVPETLMSR LRDLEEELDF
101: VLSDHEFQAE LTTALRDYVG RETPLYLAGR LTEHYRNKSR TTGDGPEIYL KREDLGHSGS HKMNNALAQA MIARRLGCSR VVAATGAGQH GVATAAACAK
201: LCLECTVFMG TTDIEKQSSN VLSMKLLGAQ VSSLEGTFQD ASSEAIRNWI ENLETTYYLS GTVVGPHPSP VMVREFQSVI GKETRRQAKR LWGGKPDVLV
301: ACVGSGSNAL GLFNEFVGDE DVRLVGVKAA GLGLDSGKHS ATLAVGDVGV LEYPGVGPEK SFLKETGRVE FYTATDKEAI QACMLLSRLE GIIPALEASH
401: ALAFLDKLVP ILHDGAKVIV NCNGRGDKDI DTLIQRGMPS SLSRVTKMSH YT

Best Arabidopsis Sequence Match ( AT5G28237.1 )
(BLAST)

001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC
101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL
201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV
301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE
401: AIQACMRLSR LEGIIPALEA SHALAFLDKL VPTLRDGAKV VVNCSGRGDK DLDTLIQRGM PSSFC

Arabidopsis Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F4K727]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.