Factsheet for Bra028191.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38530.1	Bra000267.1-P	AT2G42580.1	19000166
AT5G38530.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74518	Canola	plastid	99.8	99.8
Bra028413.1-P	Field mustard	plastid	92.4	92.4
Bra025430.1-P	Field mustard	plastid	87.4	88.46
AT5G38530.1	Thale cress	plastid	86.6	85.57
Zm00001d046676_P001	Maize	extracellular	59.2	79.36
Solyc12g096190.1.1	Tomato	plastid	77.2	78.46
PGSC0003DMT400075555	Potato	plastid	75.6	76.83
VIT_14s0083g00460.t01	Wine grape	plastid	74.4	75.15
KRG93806	Soybean	cytosol	35.6	74.48
KRH18295	Soybean	nucleus, plastid	73.4	73.11
TraesCS7A01G392800.1	Wheat	plastid	70.6	72.48
HORVU7Hr1G092800.3	Barley	plastid	70.4	71.84
Os06t0632200-02	Rice	plastid	69.6	71.46
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	69.6	71.46
TraesCS7D01G388400.3	Wheat	cytosol	70.2	71.2
KXG20416	Sorghum	plastid	70.2	71.05
GSMUA_Achr2P05390_001	Banana	plastid	70.2	70.06
TraesCS2A01G257700.1	Wheat	nucleus	11.0	53.4
Bra037230.1-P	Field mustard	plastid	21.4	24.26
Bra026381.1-P	Field mustard	cytosol	4.8	23.76
Bra002954.1-P	Field mustard	plastid	21.8	23.44
Bra019075.1-P	Field mustard	plastid	22.0	23.31
Bra016829.1-P	Field mustard	plastid	21.2	22.84
Bra016830.1-P	Field mustard	plastid	20.0	22.12

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	EnsemblPlantsGene:Bra028191	EnsemblPlants:Bra028191.1
EnsemblPlants:Bra028191.1-P	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0005488
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030170
UniProt:M4EHC6	HAMAP:MF_00133	PFAM:PF00291	InterPro:PLP-dep	PANTHER:PTHR43565	SUPFAM:SSF53686
TIGRFAMs:TIGR01415	InterPro:Trp_synth_b-like	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI00025445BB
SEG:seg	:	:	:	:	:

Description

AT5G38530 (E=8e-266) | tryptophan synthase-related

Coordinates

chrA04:+:6528648..6530827

Molecular Weight (calculated)

55086.2 Da

IEP (calculated)

7.857

GRAVY (calculated)

-0.241

Length

500 amino acids

Sequence
(BLAST)

001: MAAQLLLPPN PFTKSASAKL FFTGDDSTLK RKSKHPTRVS NGFSLRANAA LRSNHSSSVE IPSRWYNIVA DLSVKPPPPL HPKTYEPIKP EDLAHLFPNE
101: IIKQEATLER FIDIPEEVLE IYKLWRPTPL IRAKRLEKLL QTPARIYFKY EGGSPAGSHK PNSAVPQAYY NAKEGVKNLV TETGAGQWGS SLAFASSLFG
201: LNCEVWQVAN SYHQKPYRRL MMQTWGAKVH PSPSDLTEAG RRILQVDPSS PGSLGIAISE AVEVAARNED TKYCLGSVLN HVLLHQTVIG EECIKQMEAF
301: GETPDVIIGC TGGGSNFAGL SFPYIREKLK GKINPVIRAV EPSACPSLTK GVYAYDFGDT AGLTPLMKMH TLGHDFIPDP IHSGGLRYHG MAPLISHVYE
401: QGFMEAISIP QTECFQGAIQ FARTEGIIPA PEPTHAIAAT IREALRCKET GEAKVILMAM CGHGHFDLSS YDKYLRGELI DLSFSEERIR ESLSKVPHVV

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.