Factsheet for Bra016829.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72593	Canola	cytosol, plastid	56.68	98.5
AT5G28237.1	Thale cress	mitochondrion	80.39	80.22
Bra037230.1-P	Field mustard	plastid	71.55	75.28
Bra016830.1-P	Field mustard	plastid	72.84	74.78
VIT_10s0116g00710.t01	Wine grape	plastid	65.3	63.52
PGSC0003DMT400029363	Potato	plastid	60.13	60.78
Solyc10g005320.2.1	Tomato	plastid	59.27	59.78
KRH27603	Soybean	mitochondrion	59.05	59.31
Solyc10g018390.1.1	Tomato	cytosol	56.68	57.8
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	12.28	57.0
Bra002954.1-P	Field mustard	plastid	56.47	56.34
Bra019075.1-P	Field mustard	plastid	56.25	55.3
Bra026381.1-P	Field mustard	cytosol	11.85	54.46
Solyc10g018380.1.1	Tomato	cytosol	22.84	50.72
PGSC0003DMT400074916	Potato	cytosol	10.78	50.51
Bra028413.1-P	Field mustard	plastid	23.28	21.6
Bra028191.1-P	Field mustard	plastid	22.84	21.2
Bra025430.1-P	Field mustard	plastid	21.77	20.45
HORVU4Hr1G035330.1	Barley	plastid	5.82	19.85

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:50.4.2	EnsemblPlantsGene:Bra016829	EnsemblPlants:Bra016829.1
EnsemblPlants:Bra016829.1-P	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0006568
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009987
GO:GO:0016829	UniProt:M4DK01	HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413	InterPro:PLP-dep
ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF2	SUPFAM:SSF53686	TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS
InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0002546402	SEG:seg	:

Description

AT5G28237 (E=2e-222) | tryptophan synthase, beta subunit, putative

Coordinates

chrA08:-:20173603..20177081

Molecular Weight (calculated)

50206.2 Da

IEP (calculated)

7.147

GRAVY (calculated)

-0.176

Length

464 amino acids

Sequence
(BLAST)

001: MSSTKIQIRG QPLFKVLTRN HRMINSVVCG VPIKRQHRVS NVLRTSDPPL GSVPTRTDES QFLRGDGNGR FGRFGGKFVP ETLMSPLRDL EDEFDFVLND
101: HEFQEELTTA LRDYVGRETP LYFAGRLTEH YKNISQTTGG GPEIYLKRED LSHCGSHKIN NALGQAMIAR RLGCKRVVAA TGAGQHGVAT AAACAKLSIE
201: CTVFMGTTDI EKHSSNVLSM KLLGAQVKSV EGTFKDASSE AIRNWVGNLE TTYYLSGTVV GPHPNPLMVR EFQSVIGKET RRQAKQLWGG KPDVLVACVG
301: SGSNALGLFL EFLGDEDVRL VGVEAAGLGL DSGKHSATLA VGDVGVYHGS MSYLLQDDQG QILKPHSIGV GLEYPGVGPE ISFLKESGRA EFYTATDQEA
401: VQACMLLSRL EGIIPALEAS HALAFLDKLV PTLRDGAKVV VNCSGRGDKD LDTLIQRGMP SSLC

Best Arabidopsis Sequence Match ( AT5G28237.1 )
(BLAST)

001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC
101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL
201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV
301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE
401: AIQACMRLSR LEGIIPALEA SHALAFLDKL VPTLRDGAKV VVNCSGRGDK DLDTLIQRGM PSSFC

Arabidopsis Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F4K727]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.