Factsheet for Solyc10g018380.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72593	Canola	cytosol, plastid	51.2	40.07
Solyc10g018390.1.1	Tomato	cytosol	68.42	31.43
Solyc10g005320.2.1	Tomato	plastid	66.03	30.0
VIT_10s0116g00710.t01	Wine grape	plastid	56.94	24.95
Bra037230.1-P	Field mustard	plastid	51.2	24.26
CDY30322	Canola	plastid	50.72	24.04
CDY49790	Canola	mitochondrion	51.2	22.96
KRH27603	Soybean	mitochondrion	50.72	22.94
Bra016829.1-P	Field mustard	plastid	50.72	22.84
Solyc10g006400.2.1	Tomato	plastid	50.72	22.65
Solyc07g064280.2.1	Tomato	plastid	49.28	22.59
AT5G28237.1	Thale cress	mitochondrion	50.24	22.58
Bra016830.1-P	Field mustard	plastid	48.33	22.35
CDY21004	Canola	mitochondrion	32.54	20.24
Solyc12g096190.1.1	Tomato	plastid	24.88	10.57
PGSC0003DMT400074916	Potato	cytosol	4.78	10.1
HORVU4Hr1G035330.1	Barley	plastid	6.22	9.56
CDY57048	Canola	cytosol	0.96	1.59
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	0.0	0.0
CDY05419	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:50.4.2	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0004834	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:K4CYW2
PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF2	SUPFAM:SSF53686
EnsemblPlantsGene:Solyc10g018380.1	EnsemblPlants:Solyc10g018380.1.1	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000276C789

Description

No Description!

Coordinates

chr10:-:7630113..7631688

Molecular Weight (calculated)

23464.1 Da

IEP (calculated)

10.005

GRAVY (calculated)

-0.099

Length

209 amino acids

Sequence
(BLAST)

001: MELEVVLRDY VGLEIPLHFA QKLTDYYKRI NKGIGSDIYL KREDLNHGGA HKINNAIAQA MLAKRINFKN VVVPTGAGQH GVATAAACAK VSLECTILMG
101: SLDMERQPSN VLLMKHLGAK VHPFSTSWPS EISQRKLQRC YVRSFKDAMS VGAAIRPHPC PTMVRAFKSI IEKETRKQAK EKWDGMLVLG VALMLWDCFM
201: NLYKMNMLG

Best Arabidopsis Sequence Match ( AT5G28237.2 )
(BLAST)

001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC
101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL
201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV
301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE
401: AIQGTYLIVR HEQNLIITGP FLNSNWTVTV TINRKID

Arabidopsis Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F4K727]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.