Factsheet for PGSC0003DMT400074916

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
plastid 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	23.23	23.0
CDY72593	Canola	cytosol, plastid	50.51	18.73
CDY21004	Canola	mitochondrion	49.49	14.58
Solyc10g018390.1.1	Tomato	cytosol	63.64	13.85
PGSC0003DMT400029363	Potato	plastid	61.62	13.29
PGSC0003DMT400037303	Potato	cytosol	49.49	11.95
VIT_10s0116g00710.t01	Wine grape	plastid	53.54	11.11
CDY30322	Canola	plastid	49.49	11.11
PGSC0003DMT400002722	Potato	plastid	50.51	10.96
CDY49790	Canola	mitochondrion	51.52	10.94
Bra037230.1-P	Field mustard	plastid	48.48	10.88
Bra016829.1-P	Field mustard	plastid	50.51	10.78
KRH27603	Soybean	mitochondrion	48.48	10.39
AT5G28237.1	Thale cress	mitochondrion	48.48	10.32
HORVU4Hr1G035330.1	Barley	plastid	11.11	8.09
Bra016830.1-P	Field mustard	plastid	35.35	7.74
Solyc10g018380.1.1	Tomato	cytosol	10.1	4.78
PGSC0003DMT400075555	Potato	plastid	12.12	2.44
CDY57048	Canola	cytosol	3.03	2.38
CDY05419	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0004834	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	UniProt:M1CUC6	EnsemblPlantsGene:PGSC0003DMG400029136	PGSC:PGSC0003DMG400029136	EnsemblPlants:PGSC0003DMT400074916	PANTHER:PTHR42882
PANTHER:PTHR42882:SF2	SUPFAM:SSF53686	TMHMM:TMhelix	InterPro:Trp_synth_beta	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0002961F60

Description

Tryptophan synthase beta chain [Source:PGSC_GENE;Acc:PGSC0003DMG400029136]

Coordinates

chr6:+:18599869..18600442

Molecular Weight (calculated)

10738.7 Da

IEP (calculated)

5.482

GRAVY (calculated)

-0.079

Length

99 amino acids

Sequence
(BLAST)

1: MRSATYIGTT EVLISFGLGF FYGRNIINVH VKSIKGSFND SVSQDEDVRL IGVEAGGTGL DSDQHSATMA RGQVGVYHGA MSYLLQDEDR QFIGPHSIV

Best Arabidopsis Sequence Match ( AT5G28237.2 )
(BLAST)

001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC
101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL
201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV
301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE
401: AIQGTYLIVR HEQNLIITGP FLNSNWTVTV TINRKID

Arabidopsis Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F4K727]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.