Factsheet for Solyc05g046350.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05419	Canola	cytosol	30.0	31.58
CDY57048	Canola	cytosol	31.0	24.6
PGSC0003DMT400074916	Potato	cytosol	23.0	23.23
Solyc10g018390.1.1	Tomato	cytosol	86.0	18.9
CDY21004	Canola	mitochondrion	52.0	15.48
Solyc10g005320.2.1	Tomato	plastid	71.0	15.43
VIT_10s0116g00710.t01	Wine grape	plastid	65.0	13.63
KRH27603	Soybean	mitochondrion	57.0	12.34
Bra016829.1-P	Field mustard	plastid	57.0	12.28
Solyc07g064280.2.1	Tomato	plastid	55.0	12.06
CDY30322	Canola	plastid	53.0	12.02
Bra037230.1-P	Field mustard	plastid	53.0	12.02
AT5G28237.1	Thale cress	mitochondrion	54.0	11.61
Solyc10g006400.2.1	Tomato	plastid	54.0	11.54
CDY49790	Canola	mitochondrion	53.0	11.37
CDY72593	Canola	cytosol, plastid	23.0	8.61
Bra016830.1-P	Field mustard	plastid	33.0	7.3
Solyc12g096190.1.1	Tomato	plastid	28.0	5.69
HORVU4Hr1G035330.1	Barley	plastid	3.0	2.21
Solyc10g018380.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0004834	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:K4C0W8
PANTHER:PTHR42882	PANTHER:PTHR42882:SF2	SUPFAM:SSF53686	EnsemblPlantsGene:Solyc05g046350.1	EnsemblPlants:Solyc05g046350.1.1	InterPro:Trp_synth_beta
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0002766ACC	:	:	:	:

Description

No Description!

Coordinates

chr5:-:58772761..58773678

Molecular Weight (calculated)

11071.3 Da

IEP (calculated)

6.381

GRAVY (calculated)

-0.017

Length

100 amino acids

Sequence
(BLAST)

1: MARGQIGVYH GAMSYLLQDE EGQIIIPHSI SVGLFHFCVA AYKRLCRQEG IIPSLEASHA IAFLDKLCYT LKDGEKVTIN LSGHGEKDAA FVFDHTPNHE

Best Arabidopsis Sequence Match ( AT5G54810.1 )
(BLAST)

001: MAASGTSATF RASVSSAPSS SSQLTHLKSP FKAVKYTPLP SSRSKSSSFS VSCTIAKDPP VLMAAGSDPA LWQRPDSFGR FGKFGGKYVP ETLMHALSEL
101: ESAFYALATD DDFQRELAGI LKDYVGRESP LYFAERLTEH YRRENGEGPL IYLKREDLNH TGAHKINNAV AQALLAKRLG KKRIIAETGA GQHGVATATV
201: CARFGLECII YMGAQDMERQ ALNVFRMRLL GAEVRGVHSG TATLKDATSE AIRDWVTNVE TTHYILGSVA GPHPYPMMVR DFHAVIGKET RKQALEKWGG
301: KPDVLVACVG GGSNAMGLFH EFVNDTEVRM IGVEAAGFGL DSGKHAATLT KGDVGVLHGA MSYLLQDDDG QIIEPHSISA GLDYPGVGPE HSFFKDMGRA
401: EYYSITDEEA LEAFKRVSRL EGIIPALETS HALAYLEKLC PTLSDGTRVV LNFSGRGDKD VQTVAKYLDV

Arabidopsis Description

TSB1Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.