Factsheet for Solyc10g018390.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 4
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	18.9	86.0
Solyc10g005320.2.1	Tomato	plastid	75.16	74.35
CDY72593	Canola	cytosol, plastid	42.2	71.91
Solyc10g018380.1.1	Tomato	cytosol	31.43	68.42
PGSC0003DMT400074916	Potato	cytosol	13.85	63.64
VIT_10s0116g00710.t01	Wine grape	plastid	64.18	61.22
CDY21004	Canola	mitochondrion	42.64	57.74
CDY49790	Canola	mitochondrion	58.9	57.51
KRH27603	Soybean	mitochondrion	58.02	57.14
Bra016829.1-P	Field mustard	plastid	57.8	56.68
AT5G28237.1	Thale cress	mitochondrion	57.8	56.56
CDY30322	Canola	plastid	54.07	55.78
Bra037230.1-P	Field mustard	plastid	54.07	55.78
Solyc07g064280.2.1	Tomato	plastid	54.07	53.95
Solyc10g006400.2.1	Tomato	plastid	54.73	53.21
Bra016830.1-P	Field mustard	plastid	51.65	51.99
CDY05419	Canola	cytosol	10.11	48.42
CDY57048	Canola	cytosol	12.53	45.24
Solyc12g096190.1.1	Tomato	plastid	21.76	20.12
HORVU4Hr1G035330.1	Barley	plastid	5.05	16.91

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:50.4.2	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0004834	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073
GO:GO:0009987	GO:GO:0016829	UniProt:K4CYW3	HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413
InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF2	SUPFAM:SSF53686	EnsemblPlantsGene:Solyc10g018390.1
EnsemblPlants:Solyc10g018390.1.1	TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI000276C78A	:	:	:	:	:

Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:K4CYW3]

Coordinates

chr10:-:7729852..7734715

Molecular Weight (calculated)

50413.0 Da

IEP (calculated)

8.102

GRAVY (calculated)

-0.171

Length

455 amino acids

Sequence
(BLAST)

001: MAFNVETNFG QQKVFGRKLH HFPIFRYKKG ANVISCVAIG PTQVPQLPWK LIFNEKERPL LSNEKIGIYG GKFVPETLIS SLTKLDYEFN SALHDPQFQM
101: ELEVALRDYV GRETPLHFAQ RLTDYYKSIN KGIGPDIYLK REDLNHGGAH KINNAIAQAM LAKRIGFKNV VVSTGAGQHG VSTAAACAKL SLECTIFMGS
201: LDMERQPSNV LLMKNLGAKV KLVKGSFKDA MSEGIRYWVN NLDKTYFLVG ATIGPHPCPT MVRNFQSIIG KETRRQAMEK WGGKPHVLVA CVGSGSNALG
301: LFHEFIQDEH VRLIGVEAGG IGLDSDQHSA TMARGQVGVY HGAMSYLLQD EEGQIIVPHS IGVGLEYPGV SPELSFLKDK RRIEFSIVTD EEALEAYKRL
401: CRLEGIIPSL EASHAIAFLD KLCYTLKDGE KVIINLSGHG EKDAAFVFNH TPNHE

Best Arabidopsis Sequence Match ( AT5G28237.1 )
(BLAST)

001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC
101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL
201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV
301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE
401: AIQACMRLSR LEGIIPALEA SHALAFLDKL VPTLRDGAKV VVNCSGRGDK DLDTLIQRGM PSSFC

Arabidopsis Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F4K727]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.