Factsheet for PGSC0003DMT400029363

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005320.2.1	Tomato	plastid	82.79	82.61
CDY72593	Canola	cytosol, plastid	43.57	74.91
VIT_10s0116g00710.t01	Wine grape	plastid	67.32	64.78
PGSC0003DMT400074916	Potato	cytosol	13.29	61.62
CDY21004	Canola	mitochondrion	45.1	61.61
PGSC0003DMT400037303	Potato	cytosol	54.25	60.73
CDY49790	Canola	mitochondrion	61.66	60.73
Bra016829.1-P	Field mustard	plastid	60.78	60.13
Bra037230.1-P	Field mustard	plastid	57.3	59.64
CDY30322	Canola	plastid	57.3	59.64
AT5G28237.1	Thale cress	mitochondrion	60.35	59.57
KRH27603	Soybean	mitochondrion	59.7	59.31
PGSC0003DMT400002722	Potato	plastid	55.99	56.36
Bra016830.1-P	Field mustard	plastid	54.68	55.53
CDY05419	Canola	cytosol	11.33	54.74
CDY57048	Canola	cytosol	13.07	47.62
PGSC0003DMT400075555	Potato	plastid	20.7	19.31
HORVU4Hr1G035330.1	Barley	plastid	5.23	17.65

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	EntrezGene:102581209	Gene3D:3.40.50.1100	MapMan:50.4.2	GO:GO:0000162
GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009987	GO:GO:0016829	UniProt:M1ASN8
HAMAP:MF_00133	PFAM:PF00291	EnsemblPlantsGene:PGSC0003DMG400011282	PGSC:PGSC0003DMG400011282	EnsemblPlants:PGSC0003DMT400029363	PIRSF:PIRSF001413
InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF2	SUPFAM:SSF53686	TIGRFAMs:TIGR00263
InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000295CF54	RefSeq:XP_006352645.1

Description

Tryptophan synthase beta chain [Source:PGSC_GENE;Acc:PGSC0003DMG400011282]

Coordinates

chr10:+:369866..372589

Molecular Weight (calculated)

50016.2 Da

IEP (calculated)

7.109

GRAVY (calculated)

-0.194

Length

459 amino acids

Sequence
(BLAST)

001: MACNINVESI LGQGIFATTS SKKLQAFPSH NYKPNVISCV AIGPTHKVPQ LPWKLVFHEK ERPLLSNEKF GIYGGKFVPE TLISPLTKLD YEFNSALRDP
101: QFQMDLQVAL KDYVGRETPL YFAQRLTDHY KSLNKGIGPD IYLKREDLNH GGAHKINNAI AQAMLAKRMG CKNVVASTGA GQHGVATAAA CAKLSLECTI
201: FMGTLDMERQ PSNVLLMNHL GAKVKSVEGS FKDAMSEGIR NWVNDLETSY FLAGAAIGPH PCPTMVREFQ SIIGKETRKQ AMDKWGGKPH VLVACVGSGS
301: NALGLFHEFI QDEDVRLIGV EAGGTGLDSG KHSATIARGE VGVYHGAMSY LLQDEEGQII GPHSIGVGLE YPGVSPELSY LKDIGRAEFS MVTDEEAIKA
401: YKRLCRLEGI FPALESSHAL AFLDKLCSTL KDGEKVIVNL SGRGDKDAEA VFNHTPKHE

Best Arabidopsis Sequence Match ( AT5G28237.1 )
(BLAST)

001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC
101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL
201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV
301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE
401: AIQACMRLSR LEGIIPALEA SHALAFLDKL VPTLRDGAKV VVNCSGRGDK DLDTLIQRGM PSSFC

Arabidopsis Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F4K727]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.