Factsheet for Bra028413.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67409	Canola	plastid	94.8	99.37
CDY30314	Canola	plastid	94.0	98.53
CDY50576	Canola	plastid	93.6	98.11
CDY63316	Canola	cytosol	73.4	95.08
Bra028191.1-P	Field mustard	plastid	92.4	92.4
Bra025430.1-P	Field mustard	plastid	86.0	87.04
Zm00001d046676_P001	Maize	extracellular	59.6	79.89
Solyc12g096190.1.1	Tomato	plastid	77.4	78.66
PGSC0003DMT400075555	Potato	plastid	76.0	77.24
VIT_14s0083g00460.t01	Wine grape	plastid	75.8	76.57
KRG93806	Soybean	cytosol	35.4	74.06
KRH18295	Soybean	nucleus, plastid	73.2	72.91
Os06t0632200-02	Rice	plastid	70.6	72.48
KXG20416	Sorghum	plastid	71.6	72.47
TraesCS7A01G392800.1	Wheat	plastid	70.0	71.87
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	69.8	71.66
HORVU7Hr1G092800.3	Barley	plastid	69.8	71.22
TraesCS7D01G388400.3	Wheat	cytosol	69.6	70.59
GSMUA_Achr2P05390_001	Banana	plastid	70.6	70.46
TraesCS2A01G257700.1	Wheat	nucleus	11.0	53.4
Bra026381.1-P	Field mustard	cytosol	5.0	24.75
Bra037230.1-P	Field mustard	plastid	21.8	24.72
Bra002954.1-P	Field mustard	plastid	22.2	23.87
Bra019075.1-P	Field mustard	plastid	22.4	23.73
Bra016829.1-P	Field mustard	plastid	21.6	23.28
Bra016830.1-P	Field mustard	plastid	20.2	22.35

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	EnsemblPlantsGene:Bra028413	EnsemblPlants:Bra028413.1
EnsemblPlants:Bra028413.1-P	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0005488
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030170
UniProt:M4EHZ8	HAMAP:MF_00133	PFAM:PF00291	InterPro:PLP-dep	PANTHER:PTHR43565	SUPFAM:SSF53686
TIGRFAMs:TIGR01415	InterPro:Trp_synth_b-like	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000254323C
SEG:seg	:	:	:	:	:

Description

AT5G38530 (E=2e-271) | tryptophan synthase-related

Coordinates

chrA02:+:157046..159280

Molecular Weight (calculated)

54985.1 Da

IEP (calculated)

7.114

GRAVY (calculated)

-0.216

Length

500 amino acids

Sequence
(BLAST)

001: MTSQLLLPPN PFTRPVSAKV FLTGDDLTLK RKSNQATRVS NGFSLRAKAA LRSNHSSSVE IPNQWYNLIA DLSVKPPPPL HPKTFEPIKP EDLSHLFPNE
101: LIKQEATLER FIDIPEEVLE IYKLWRPTPL IRAKRLEKLL QTPARIYFKY EGGSPAGSHK PNTAVPQAYY NAKEGVKNVV TETGAGQWGS SLAFASSLFG
201: LDCKVWQVAN SYHQKPYRRL MMETWGAKVH PSPSDLTEAG RKILESDPSS PGSLGIAISE AVEVAARNED TKYCLGSVLN HVLLHQTVIG EECIKQMEDF
301: GETPDVIIGC TGGGSNFAGL SFPFIREKLK GNISPVIRAV EPSACPSLTK GVYAYDFGDT AGLTPLMKMH TLGHDFIPDP IHAGGLRYHG MAPLISHVYE
401: QGFMEAISIP QIECFQGAIQ FARAEGIIPA PEPTHAIAAT IREALRCKET GEAKVILMAM CGHGHFDLSS YDKYLKGELV DLSFSEDKIR ESLSKVPHVV

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.