CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38530.1	EES01073	AT2G42580.1	19000166
AT5G38530.1	EES02247	AT2G42580.1	19000166
AT5G38530.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046676_P001	Maize	extracellular	73.89	97.86
Os06t0632200-02	Rice	plastid	84.41	85.63
HORVU7Hr1G092800.3	Barley	plastid	81.78	82.45
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	80.97	82.14
TraesCS7D01G388400.3	Wheat	cytosol	81.17	81.34
CDY63316	Canola	cytosol	61.34	78.5
GSMUA_Achr2P05390_001	Banana	plastid	76.11	75.05
CDX99679	Canola	cytosol	16.6	74.55
VIT_14s0083g00460.t01	Wine grape	plastid	72.87	72.73
PGSC0003DMT400075555	Potato	plastid	72.27	72.56
Solyc12g096190.1.1	Tomato	plastid	72.06	72.36
KRH18295	Soybean	nucleus, plastid	73.08	71.91
Bra028413.1-P	Field mustard	plastid	72.47	71.6
KRG93806	Soybean	cytosol	34.21	70.71
AT5G38530.1	Thale cress	plastid	72.06	70.36
Bra028191.1-P	Field mustard	plastid	71.05	70.2
CDY01654	Canola	plastid	71.05	70.06
CDX67409	Canola	plastid	67.61	70.02
CDY30314	Canola	plastid	67.61	70.02
CDX74518	Canola	plastid	70.85	70.0
CDY50576	Canola	plastid	67.41	69.81
CDY52465	Canola	plastid	69.64	68.8
CDX99680	Canola	plastid	69.43	68.6
Bra025430.1-P	Field mustard	plastid	67.81	67.81
TraesCS2A01G257700.1	Wheat	nucleus	11.34	54.37
EES13315	Sorghum	plastid	22.47	23.32

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	EntrezGene:8067674	UniProt:A0A194YLE2
GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0005488	GO:GO:0006568
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030170	EnsemblPlants:KXG20416
ProteinID:KXG20416	ProteinID:KXG20416.1	HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413	PIRSF:PIRSF500824
InterPro:PLP-dep	PANTHER:PTHR43565	EnsemblPlantsGene:SORBI_3010G198000	SUPFAM:SSF53686	unigene:Sbi.4106	TIGRFAMs:TIGR01415
InterPro:Trp_synth_b-like	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0007F25B6C	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:54113048..54118235

Molecular Weight (calculated)

53265.0 Da

IEP (calculated)

7.109

GRAVY (calculated)

-0.118

Length

494 amino acids

Sequence
(BLAST)

001: MAAAAALRPA LSQAAGPEHR ASLLCTPKHR VSASASRRSL RFTARASSNP GAQVSIPKQW YNLIADLPVK PPPPLHPQTH QPLNPSDLSP LFPDELIRQE
101: VTDERFVDIP EEVIDVYKLW RPTPLIRARR LEKLLGTPAK IYYKYEGTSP AGSHKPNTAV PQAWYNAAAG VKNVVTETGA GQWGSALSFA SSLFGLNCEV
201: WQVRASFDQK PYRRLMMETW GAKVHPSPST ATEAGKRILE ADPSSPGSLG IAISEAVEVA ATNADTKYCL GSVLNHVLLH QTVIGEECLE QLAALGETPD
301: VVIGCTGGGS NFGGLAFPFL REKLRGNMSP AFRAVEPAAC PTLTKGVYAY DFGDTAGLTP LMKMHTLGHG FVPDPIHAGG LRYHGMAPLI SHVYELGFMD
401: AIAIQQTECF QAALQFARTE GIIPAPEPTH AIAAAIREAL ECKRTGEEKV ILMAMCGHGH FDLAAYEKYL RGDMVDLSHP AEKLEASLAA VPKV

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.