Factsheet for TraesCS7D01G388400.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38530.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT5G38530.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G392800.1	Wheat	plastid	96.15	97.33
HORVU7Hr1G092800.3	Barley	plastid	92.49	93.06
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	89.66	90.76
Zm00001d046676_P001	Maize	extracellular	67.75	89.54
Os06t0632200-02	Rice	plastid	80.32	81.31
KXG20416	Sorghum	plastid	81.34	81.17
CDY63316	Canola	cytosol	60.24	76.94
GSMUA_Achr2P05390_001	Banana	plastid	73.63	72.46
VIT_14s0083g00460.t01	Wine grape	plastid	72.41	72.12
CDX99679	Canola	cytosol	16.02	71.82
PGSC0003DMT400075555	Potato	plastid	71.4	71.54
Solyc12g096190.1.1	Tomato	plastid	71.2	71.34
KRH18295	Soybean	nucleus, plastid	71.6	70.32
Bra028191.1-P	Field mustard	plastid	71.2	70.2
CDX74518	Canola	plastid	70.99	70.0
CDY01654	Canola	plastid	70.99	69.86
Bra028413.1-P	Field mustard	plastid	70.59	69.6
KRG93806	Soybean	cytosol	33.47	69.04
AT5G38530.1	Thale cress	plastid	70.59	68.77
CDY52465	Canola	plastid	69.37	68.4
CDX99680	Canola	plastid	69.37	68.4
CDY30314	Canola	plastid	65.72	67.92
CDX67409	Canola	plastid	65.72	67.92
CDY50576	Canola	plastid	65.52	67.71
Bra025430.1-P	Field mustard	plastid	67.75	67.61
TraesCS7D01G305300.1	Wheat	plastid	22.52	23.62

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0004834	GO:GO:0005488	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0030170	HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413
PIRSF:PIRSF500824	InterPro:PLP-dep	PANTHER:PTHR43565	SUPFAM:SSF53686	TIGRFAMs:TIGR01415	EnsemblPlantsGene:TraesCS7D01G388400
EnsemblPlants:TraesCS7D01G388400.3	InterPro:Trp_synth_b-like	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	TIGR:cd06446

Description

No Description!

Coordinates

chr7D:+:502877693..502879628

Molecular Weight (calculated)

53980.8 Da

IEP (calculated)

6.691

GRAVY (calculated)

-0.191

Length

493 amino acids

Sequence
(BLAST)

001: MKDYQYFLDR QHCQCLLFVP EQASSLHRLP KHRVAVTGRR SFAARAGSYP GNVGVPKQWY NLIADLPVKP PPMLHPGTHQ PLNPSDLAPL FPDELIRQEL
101: TEERFIDIPD EVRDVYELWR PTPLIRAKRL EKLLGTPAKI YYKYEGTSPA GSHKGNTAVP QAWYNAAAGV KNVVTETGAG QWGSALSFAS TLFGLNCEVW
201: QVRASYDQKP YRRLMMETWG AKVHPSPSDV TEAGRRLLAA DPSSPGSLGM AISEAVEVAA TNADTKYCLG SVLNHVLLHQ TVIGEECLEQ LAAIGDTPDV
301: VIGCTGGGSN FGGLAFPFMR EKLAGRMNPQ FKAVEPAACP TLTKGVYAYD YGDTAGLTPL MKMHTLGHDF VPDPIHAGGL RYHGMAPLIS HVYELGFMEA
401: MSIQQTECFE AALQFARTEG IIPAPEPTHA IAAAIREALE CKRTGEEKVI LIAMCGHGHF DLAAYDRYLR GDMIDLSHSA EKLKESLGAI PKV

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.