Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G38530.1 | CDY42827 | AT2G42580.1 | 19000166 |
| AT5G38530.1 | CDY51514 | AT2G42580.1 | 19000166 |
| AT5G38530.1 | CDY55390 | AT2G42580.1 | 19000166 |
| AT5G38530.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG93806 | Soybean | cytosol | 60.91 | 28.03 |
| CDY05419 | Canola | cytosol | 22.73 | 26.32 |
| CDY63316 | Canola | cytosol | 89.09 | 25.39 |
| Bra025430.1-P | Field mustard | plastid | 97.27 | 21.66 |
| CDY52465 | Canola | plastid | 98.18 | 21.6 |
| CDX99680 | Canola | plastid | 98.18 | 21.6 |
| Zm00001d046676_P001 | Maize | extracellular | 72.73 | 21.45 |
| CDY57048 | Canola | cytosol | 23.64 | 20.63 |
| CDY30314 | Canola | plastid | 89.09 | 20.55 |
| CDY53670 | Canola | cytosol | 21.82 | 20.34 |
| CDX67409 | Canola | plastid | 87.27 | 20.13 |
| CDY50576 | Canola | plastid | 87.27 | 20.13 |
| CDX74518 | Canola | plastid | 90.0 | 19.8 |
| CDY01654 | Canola | plastid | 90.0 | 19.76 |
| AT5G38530.1 | Thale cress | plastid | 90.0 | 19.57 |
| CDX89281 | Canola | cytosol | 17.27 | 18.81 |
| PGSC0003DMT400075555 | Potato | plastid | 81.82 | 18.29 |
| Solyc12g096190.1.1 | Tomato | plastid | 80.91 | 18.09 |
| VIT_14s0083g00460.t01 | Wine grape | plastid | 78.18 | 17.37 |
| Os06t0632200-02 | Rice | plastid | 74.55 | 16.84 |
| KXG20416 | Sorghum | plastid | 74.55 | 16.6 |
| GSMUA_Achr2P05390_001 | Banana | plastid | 75.45 | 16.57 |
| KRH18295 | Soybean | nucleus, plastid | 75.45 | 16.53 |
| TraesCS2A01G257700.1 | Wheat | nucleus | 15.45 | 16.5 |
| HORVU7Hr1G092800.3 | Barley | plastid | 72.73 | 16.33 |
| TraesCS7A01G392800.1 | Wheat | plastid | 71.82 | 16.22 |
| TraesCS7B01G294800.1 | Wheat | mitochondrion, plastid | 71.82 | 16.22 |
| TraesCS7D01G388400.3 | Wheat | cytosol | 71.82 | 16.02 |
| CDY55463 | Canola | cytosol | 22.73 | 8.36 |
| CDX82609 | Canola | cytosol | 21.82 | 8.03 |
| CDY21004 | Canola | mitochondrion | 20.91 | 6.85 |
| CDY56040 | Canola | plastid | 16.36 | 5.9 |
| CDY30322 | Canola | plastid | 22.73 | 5.67 |
| CDX92783 | Canola | plastid | 23.64 | 5.51 |
| CDY46668 | Canola | plastid | 23.64 | 5.51 |
| CDY17275 | Canola | plastid | 22.73 | 5.38 |
| CDY19860 | Canola | plastid | 22.73 | 5.38 |
| CDY49790 | Canola | mitochondrion | 21.82 | 5.15 |
| CDY72593 | Canola | cytosol, plastid | 0.91 | 0.37 |
Protein Annotations
| KEGG:00260+4.2.1.20 | KEGG:00400+4.2.1.20 | Gene3D:3.40.50.1100 | MapMan:35.2 | GO:A0A078EFV4 | EnsemblPlants:CDX99679 |
| ProteinID:CDX99679 | ProteinID:CDX99679.1 | GO:GO:0000162 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004834 |
| GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030170 |
| EnsemblPlantsGene:GSBRNA2T00108231001 | PANTHER:PTHR43565 | SUPFAM:SSF53686 | InterPro:Trp_synth_b-like | InterPro:Trypto_synt_PLP_dependent | UniPathway:UPA00035 |
| UniParc:UPI0004EEEBA0 | : | : | : | : | : |
Description
BnaC04g34360D
Coordinates
chrLK031912:-:1076159..1076714
Molecular Weight (calculated)
12148.8 Da
IEP (calculated)
4.868
GRAVY (calculated)
0.127
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPLVSHIYD QGFMEAISIP QTECFQGAIQ FARTEGIIPA PEPTHAIAAT IREALRCKET GEAKVILMAM CGHGHFDLAS YEKYLRGELV DLLFSEEKIQ
101: ESLSKVPLVV
101: ESLSKVPLVV
001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV
Arabidopsis Description
TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.