CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38530.1	CDY42827	AT2G42580.1	19000166
AT5G38530.1	CDY51514	AT2G42580.1	19000166
AT5G38530.1	CDY55390	AT2G42580.1	19000166
AT5G38530.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74518	Canola	plastid	97.8	98.0
CDY63316	Canola	cytosol	70.66	91.71
CDX67409	Canola	plastid	86.23	90.57
CDY30314	Canola	plastid	86.23	90.57
CDY50576	Canola	plastid	85.83	90.15
CDX99679	Canola	cytosol	19.76	90.0
CDY52465	Canola	plastid	88.82	89.0
CDX99680	Canola	plastid	88.82	89.0
AT5G38530.1	Thale cress	plastid	86.63	85.77
Zm00001d046676_P001	Maize	extracellular	59.08	79.36
Solyc12g096190.1.1	Tomato	plastid	77.25	78.66
PGSC0003DMT400075555	Potato	plastid	75.65	77.03
VIT_14s0083g00460.t01	Wine grape	plastid	74.45	75.35
KRG93806	Soybean	cytosol	35.53	74.48
KRH18295	Soybean	nucleus, plastid	72.85	72.71
TraesCS7A01G392800.1	Wheat	plastid	70.26	72.28
HORVU7Hr1G092800.3	Barley	plastid	70.26	71.84
Os06t0632200-02	Rice	plastid	69.46	71.46
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	69.26	71.25
KXG20416	Sorghum	plastid	70.06	71.05
TraesCS7D01G388400.3	Wheat	cytosol	69.86	70.99
GSMUA_Achr2P05390_001	Banana	plastid	70.26	70.26
TraesCS2A01G257700.1	Wheat	nucleus	10.98	53.4
CDY05419	Canola	cytosol	5.59	29.47
CDY72593	Canola	cytosol, plastid	15.37	28.84
CDY57048	Canola	cytosol	7.19	28.57
CDY55463	Canola	cytosol	16.57	27.76
CDX82609	Canola	cytosol	16.17	27.09
CDX89281	Canola	cytosol	4.99	24.75
CDY21004	Canola	mitochondrion	16.57	24.7
CDY30322	Canola	plastid	21.36	24.26
CDY17275	Canola	plastid	21.76	23.44
CDY19860	Canola	plastid	21.76	23.44
CDX92783	Canola	plastid	21.96	23.31
CDY46668	Canola	plastid	21.96	23.31
CDY53670	Canola	cytosol	5.39	22.88
CDY49790	Canola	mitochondrion	20.16	21.67
CDY56040	Canola	plastid	12.97	21.31

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	GO:A0A078ELN6	EnsemblPlants:CDY01654
ProteinID:CDY01654	ProteinID:CDY01654.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834
GO:GO:0005488	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00112717001	HAMAP:MF_00133	PFAM:PF00291	InterPro:PLP-dep	PANTHER:PTHR43565
SUPFAM:SSF53686	TIGRFAMs:TIGR01415	InterPro:Trp_synth_b-like	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent
UniPathway:UPA00035	UniParc:UPI0004EEBE9F	SEG:seg	:	:	:

Description

BnaC04g30980D

Coordinates

chrLK031928:-:100817..103195

Molecular Weight (calculated)

55248.3 Da

IEP (calculated)

7.858

GRAVY (calculated)

-0.247

Length

501 amino acids

Sequence
(BLAST)

001: MAAQLLLPRP NPFTKSASAK LFFTGDDSTL KRKSKHPTRV SNGFSLRANA AFRSNHSSSV EIPSQWYNIV SDLSVKPPPP LHPKTFEPIK PEDLAHLFPN
101: EIIKQEATLE RFIDIPEEVL EIYKLWRPTP LIRAKRLEKL LQTPARIYFK YEGGSPAGSH KPNSAVPQAY YNAKEGVKNL VTETGAGQWG SSLAFASSLF
201: GLNCEVWQVA NSYHQKPYRR LMMQTWGAKV HPSPSDLTEA GRRILQVDPS SPGSLGIAIS EAVEVAARNE DTKYCLGSVL NHVLLHQTVI GEECIKQMEA
301: FGETPDVIIG CTGGGSNFAG LSFPYIREKL KGKINPVIRA VEPSACPSLT KGVYAYDFGD TAGLTPLMKM HTLGHDFIPD PIHSGGLRYH GMAPLISHVY
401: EQGFMEAISI PQTECFQGAI QFARTEGIIP APEPTHAIAA TIREALRCKE TGEAKVILMA MCGHGHFDLS SYDKYLRGEL IDLSFSEERI RESLSKVPHV
501: V

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.