CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82609
CDY17275
CDY19860
CDY53670
CDY55463
CDY56040

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	CDX82609	AT5G54810.1	21798944
AT5G54810.1	CDY17275	AT5G54810.1	21798944
AT5G54810.1	CDY19860	AT5G54810.1	21798944
AT5G54810.1	CDY53670	AT5G54810.1	21798944
AT5G54810.1	CDY55463	AT5G54810.1	21798944
AT5G54810.1	CDY56040	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82609	Canola	cytosol	94.65	94.65
CDY53670	Canola	cytosol	31.44	79.66
CDX89281	Canola	cytosol	22.41	66.34
CDY56040	Canola	plastid	64.21	62.95
CDY17275	Canola	plastid	90.64	58.28
CDY19860	Canola	plastid	90.64	58.28
CDX92783	Canola	plastid	91.64	58.05
CDY46668	Canola	plastid	91.64	58.05
AT5G54810.1	Thale cress	plastid	90.64	57.66
CDY21004	Canola	mitochondrion	60.87	54.17
CDY05419	Canola	cytosol	16.72	52.63
Zm00001d049610_P001	Maize	plastid	82.94	52.32
Os08t0135900-01	Rice	plastid	82.27	52.23
TraesCS7A01G308600.1	Wheat	plastid	81.94	52.13
TraesCS7D01G305300.1	Wheat	plastid	81.94	52.13
EES13315	Sorghum	plastid	82.94	52.1
TraesCS7B01G208700.1	Wheat	plastid	81.61	51.91
Zm00001d024702_P001	Maize	plastid	82.27	51.36
CDY72593	Canola	cytosol, plastid	44.82	50.19
HORVU7Hr1G073460.3	Barley	plastid	81.61	48.32
CDY57048	Canola	cytosol	19.4	46.03
CDY30322	Canola	plastid	62.21	42.18
CDY49790	Canola	mitochondrion	62.21	39.91
CDX99679	Canola	cytosol	8.36	22.73
CDY63316	Canola	cytosol	28.09	21.76
CDY52465	Canola	plastid	28.09	16.8
CDX99680	Canola	plastid	27.76	16.6
CDX74518	Canola	plastid	27.76	16.6
CDY01654	Canola	plastid	27.76	16.57
CDX67409	Canola	plastid	25.75	16.14
CDY50576	Canola	plastid	25.42	15.93
CDY30314	Canola	plastid	25.42	15.93

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:50.4.2	GO:A0A078IYJ6	UniProt:A0A078IYJ6
EnsemblPlants:CDY55463	ProteinID:CDY55463	ProteinID:CDY55463.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824
GO:GO:0004834	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009073	GO:GO:0009987	GO:GO:0016829	EnsemblPlantsGene:GSBRNA2T00016909001	PFAM:PF00291	InterPro:PLP-dep
PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	SUPFAM:SSF53686	TIGRFAMs:TIGR00263	InterPro:Trp_synth_beta	InterPro:Trypto_synt_PLP_dependent
UniPathway:UPA00035	UniParc:UPI0004EE544F	:	:	:	:

Description

BnaCnng28880DTryptophan synthase [Source:UniProtKB/TrEMBL;Acc:A0A078IYJ6]

Coordinates

chrLK033405:-:21822..23336

Molecular Weight (calculated)

32407.7 Da

IEP (calculated)

5.538

GRAVY (calculated)

-0.147

Length

299 amino acids

Sequence
(BLAST)

001: MGVDVLLLDH KRLGNKRIIA ETGAGQHGVA TATVCAQYGL ECIISMGAQD MERQALNVFR MRLLGAEVRG VHSGTATLKD ATSEAIRDWV TNVETTHYIL
101: GSVAGPHPYP MMVRDFHAVI GKKTSRQAWE KWGGKPDVLV ACVGGGSNAM GLFHEFVDDK EVRMIGVEAA GFGLDSGKHA APLTKGDVGV LHGAMSYLLQ
201: DDDGQIIEPQ LDYPGVGPEH SFFKDMGWAE YYSVTDEEAL EAFNRVSRLE GIISALETSH ALAHLEKLCP KLPDGARVVL NFSGRGDKDD QTVAKYLEV

Best Arabidopsis Sequence Match ( AT4G27070.1 )
(BLAST)

001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV

Arabidopsis Description

TSB2Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WS13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.