Factsheet for Zm00001d024702_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d024702_P001
Zm00001d049610_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	Zm00001d024702_P001	AT5G54810.1	21798944
AT5G54810.1	Zm00001d049610_P001	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13315	Sorghum	plastid	88.31	88.87
Zm00001d049610_P001	Maize	plastid	86.43	87.34
PGSC0003DMT400037303	Potato	cytosol	72.86	85.12
Os08t0135900-01	Rice	plastid	82.88	84.29
TraesCS7B01G208700.1	Wheat	plastid	82.46	84.04
TraesCS7A01G308600.1	Wheat	plastid	82.46	84.04
TraesCS7D01G305300.1	Wheat	plastid	82.25	83.83
CDX82609	Canola	cytosol	51.36	82.27
CDY55463	Canola	cytosol	51.36	82.27
GSMUA_Achr4P07140_001	Banana	mitochondrion	72.65	80.74
VIT_19s0177g00310.t01	Wine grape	plastid	75.78	79.26
Solyc07g064280.2.1	Tomato	plastid	74.53	78.29
Bra002954.1-P	Field mustard	plastid	75.99	78.28
CDY17275	Canola	plastid	75.78	78.06
CDY19860	Canola	plastid	75.78	78.06
PGSC0003DMT400002722	Potato	plastid	73.9	77.63
HORVU7Hr1G073460.3	Barley	plastid	81.63	77.43
AT5G54810.1	Thale cress	plastid	75.57	77.02
Bra019075.1-P	Field mustard	plastid	75.57	76.69
CDY46668	Canola	plastid	75.37	76.48
CDX92783	Canola	plastid	75.37	76.48
Solyc10g006400.2.1	Tomato	plastid	74.32	76.07
AT4G27070.1	Thale cress	plastid	74.74	75.37
KRH37954	Soybean	cytosol	24.22	75.32
KRG98855	Soybean	mitochondrion, plastid	73.28	74.52
KRH46102	Soybean	nucleus, plastid	73.49	73.49
CDY53670	Canola	cytosol	16.28	66.1
CDY56040	Canola	plastid	34.45	54.1
Zm00001d046676_P001	Maize	extracellular	22.13	28.42

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2	EntrezGene:732803	ProteinID:AQK41755.1
GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009073	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016829
UniProt:K7TR93	HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413	InterPro:PLP-dep	ScanProsite:PS00168
PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	SUPFAM:SSF53686	TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta
InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000221A738	EnsemblPlantsGene:Zm00001d024702	EnsemblPlants:Zm00001d024702_P001	EnsemblPlants:Zm00001d024702_T001
SEG:seg	:	:	:	:	:

Description

orange pericarp2Tryptophan synthase beta chain 2%2C chloroplastic

Coordinates

chr10:-:84130306..84133108

Molecular Weight (calculated)

51091.9 Da

IEP (calculated)

7.160

GRAVY (calculated)

-0.188

Length

479 amino acids

Sequence
(BLAST)

001: MATTAAAAIR SPTRAAAPGP AAPAQQRAVL RVASSRTSSA RPRRAAAAVA AAAMQPAKAV AAEAASPAAV EMGNGAAAPG LQRPDAMGRF GRFGGKYVPE
101: TLMHALTELE SAFHALATDD EFQKELDGIL KDYVGRESPL YFAERLTEHY KRADGTGPLI YLKREDLNHT GAHKINNAVA QALLAKRLGK QRIIAETGAG
201: QHGVATATVC ARFGLQCIIY MGAQDMERQA LNVFRMRLLG AEVRAVHSGT ATLKDATSEA IRDWVTNVET THYILGSVAG PHPYPMMVRE FHKVIGKETR
301: RQAMDKWGGK PDVLVACVGG GSNAMGLFHE FVEDQDVRLV GVEAAGHGVD TDKHAATLTK GQVGVLHGSM SYLLQDDDGQ VIEPHSISAG LDYPGVGPEH
401: SFLKDIGRAE YDSVTDQEAL DAFKRVSRLE GIIPALETSH ALAYLEKLCP TLADGVRVVV NCSGRGDKDV HTASKYLDV

Best Arabidopsis Sequence Match ( AT5G54810.1 )
(BLAST)

001: MAASGTSATF RASVSSAPSS SSQLTHLKSP FKAVKYTPLP SSRSKSSSFS VSCTIAKDPP VLMAAGSDPA LWQRPDSFGR FGKFGGKYVP ETLMHALSEL
101: ESAFYALATD DDFQRELAGI LKDYVGRESP LYFAERLTEH YRRENGEGPL IYLKREDLNH TGAHKINNAV AQALLAKRLG KKRIIAETGA GQHGVATATV
201: CARFGLECII YMGAQDMERQ ALNVFRMRLL GAEVRGVHSG TATLKDATSE AIRDWVTNVE TTHYILGSVA GPHPYPMMVR DFHAVIGKET RKQALEKWGG
301: KPDVLVACVG GGSNAMGLFH EFVNDTEVRM IGVEAAGFGL DSGKHAATLT KGDVGVLHGA MSYLLQDDDG QIIEPHSISA GLDYPGVGPE HSFFKDMGRA
401: EYYSITDEEA LEAFKRVSRL EGIIPALETS HALAYLEKLC PTLSDGTRVV LNFSGRGDKD VQTVAKYLDV

Arabidopsis Description

TSB1Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.