Factsheet for VIT_19s0177g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 3
plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0177g00310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	VIT_19s0177g00310.t01	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037303	Potato	cytosol	80.35	89.76
KRH37954	Soybean	cytosol	28.6	85.06
GSMUA_Achr4P07140_001	Banana	mitochondrion	78.6	83.53
PGSC0003DMT400002722	Potato	plastid	82.1	82.46
Solyc07g064280.2.1	Tomato	plastid	81.66	82.02
Solyc10g006400.2.1	Tomato	plastid	82.1	80.34
KRG98855	Soybean	mitochondrion, plastid	81.44	79.19
AT5G54810.1	Thale cress	plastid	80.79	78.72
KRH46102	Soybean	nucleus, plastid	81.66	78.08
AT4G27070.1	Thale cress	plastid	80.79	77.89
EES13315	Sorghum	plastid	80.13	77.1
Zm00001d049610_P001	Maize	plastid	79.04	76.37
Zm00001d024702_P001	Maize	plastid	79.26	75.78
Os08t0135900-01	Rice	plastid	77.73	75.58
TraesCS7B01G208700.1	Wheat	plastid	77.51	75.53
TraesCS7D01G305300.1	Wheat	plastid	77.29	75.32
TraesCS7A01G308600.1	Wheat	plastid	77.07	75.11
CDX89281	Canola	cytosol	15.72	71.29
HORVU7Hr1G073460.3	Barley	plastid	77.73	70.5
Bra026381.1-P	Field mustard	cytosol	15.5	70.3
VIT_10s0116g00710.t01	Wine grape	plastid	56.99	54.72
VIT_14s0083g00460.t01	Wine grape	plastid	24.24	22.42

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	EntrezGene:100264166	wikigene:100264166	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2
ProteinID:CCB48809	ProteinID:CCB48809.1	UniProt:F6H9B6	EMBL:FN595498	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0004834	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073
GO:GO:0009987	GO:GO:0016829	EntrezGene:LOC100264166	wikigene:LOC100264166	HAMAP:MF_00133	PFAM:PF00291
PIRSF:PIRSF001413	InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	SUPFAM:SSF53686
TIGR:TC62261	TIGR:TC64817	TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI00015C7C28	ArrayExpress:VIT_19s0177g00310	EnsemblPlantsGene:VIT_19s0177g00310	EnsemblPlants:VIT_19s0177g00310.t01	unigene:Vvi.3219
RefSeq:XP_002281484	RefSeq:XP_002281484.1	SEG:seg	:	:	:

Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F6H9B6]

Coordinates

chr19:-:6158376..6161965

Molecular Weight (calculated)

49700.7 Da

IEP (calculated)

7.141

GRAVY (calculated)

-0.189

Length

458 amino acids

Sequence
(BLAST)

001: MAASAKTPIS RTQTTSLYKP YSSSPQLPFK LLKLTPTPCA AKGLSICCAL QMEPKVGPGS QVPDSFGRFG KFGGKYVPET LMHALTELES AFRALSGDVE
101: FQKELDGILK DYVGRESPLY FAERLTEHYK RHNGEGPLIY LKREDLNHTG AHKINNAVAQ ALLAKRLGKT RIIAETGAGQ HGVATATVCA RFGLQCIVYM
201: GAQDMERQAL NVFRMRLLGA EVRAVHAGTA TLKDATSEAI RDWVTNVETT HYILGSVAGP HPYPMMVRDF HAVIGKETRK QAMEKWGGKP DVLVACVGGG
301: SNAMGLFYEF VDDEDVRLIG VEAAGFGLDS GKHAATLTRG EVGVLHGAMS YLLQDDDGQI IEPHSISAGL DYPGVGPEHS FLKDLGRAEY HSITDEEALE
401: AFKRLSRLEG IIPALETSHA LAYLEKLCPT LPNGTKVVLN CSGRGDKDVH TAIKHLQV

Best Arabidopsis Sequence Match ( AT5G54810.1 )
(BLAST)

001: MAASGTSATF RASVSSAPSS SSQLTHLKSP FKAVKYTPLP SSRSKSSSFS VSCTIAKDPP VLMAAGSDPA LWQRPDSFGR FGKFGGKYVP ETLMHALSEL
101: ESAFYALATD DDFQRELAGI LKDYVGRESP LYFAERLTEH YRRENGEGPL IYLKREDLNH TGAHKINNAV AQALLAKRLG KKRIIAETGA GQHGVATATV
201: CARFGLECII YMGAQDMERQ ALNVFRMRLL GAEVRGVHSG TATLKDATSE AIRDWVTNVE TTHYILGSVA GPHPYPMMVR DFHAVIGKET RKQALEKWGG
301: KPDVLVACVG GGSNAMGLFH EFVNDTEVRM IGVEAAGFGL DSGKHAATLT KGDVGVLHGA MSYLLQDDDG QIIEPHSISA GLDYPGVGPE HSFFKDMGRA
401: EYYSITDEEA LEAFKRVSRL EGIIPALETS HALAYLEKLC PTLSDGTRVV LNFSGRGDKD VQTVAKYLDV

Arabidopsis Description

TSB1Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.