CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES13315

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	EES13315	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024702_P001	Maize	plastid	88.87	88.31
PGSC0003DMT400037303	Potato	cytosol	74.58	86.59
Zm00001d049610_P001	Maize	plastid	86.13	86.5
TraesCS7B01G208700.1	Wheat	plastid	84.03	85.11
TraesCS7D01G305300.1	Wheat	plastid	83.82	84.89
TraesCS7A01G308600.1	Wheat	plastid	83.61	84.68
Os08t0135900-01	Rice	plastid	83.4	84.29
CDY55463	Canola	cytosol	52.1	82.94
CDX82609	Canola	cytosol	52.1	82.94
GSMUA_Achr4P07140_001	Banana	mitochondrion	72.9	80.51
VIT_19s0177g00310.t01	Wine grape	plastid	77.1	80.13
PGSC0003DMT400002722	Potato	plastid	75.42	78.73
HORVU7Hr1G073460.3	Barley	plastid	83.4	78.61
Solyc07g064280.2.1	Tomato	plastid	75.21	78.51
CDY17275	Canola	plastid	76.68	78.49
Bra002954.1-P	Field mustard	plastid	76.47	78.28
CDY19860	Canola	plastid	76.26	78.06
AT4G27070.1	Thale cress	plastid	77.52	77.68
AT5G54810.1	Thale cress	plastid	76.47	77.45
KRH37954	Soybean	cytosol	25.0	77.27
Solyc10g006400.2.1	Tomato	plastid	75.84	77.14
CDY46668	Canola	plastid	76.47	77.12
CDX92783	Canola	plastid	76.47	77.12
Bra019075.1-P	Field mustard	plastid	76.47	77.12
KRG98855	Soybean	mitochondrion, plastid	73.95	74.73
KRH46102	Soybean	nucleus, plastid	74.16	73.7
CDY53670	Canola	cytosol	16.6	66.95
CDY56040	Canola	plastid	35.08	54.75
KXG20416	Sorghum	plastid	23.32	22.47

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2	EntrezGene:8067797	ProteinID:AAL73524.1
EnsemblPlants:EES13315	ProteinID:EES13315	ProteinID:EES13315.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824
GO:GO:0004834	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006568
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009987
GO:GO:0016829	HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413	InterPro:PLP-dep	ScanProsite:PS00168
PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	UniProt:Q8W0T4	EnsemblPlantsGene:SORBI_3007G032000	SUPFAM:SSF53686	unigene:Sbi.14741
TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI00000A5018
RefSeq:XP_002443820.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:2834340..2837462

Molecular Weight (calculated)

50823.5 Da

IEP (calculated)

6.905

GRAVY (calculated)

-0.212

Length

476 amino acids

Sequence
(BLAST)

001: MAAATIRSPT RAAAAGGPAA APTQQRSVLR VASSAASASS SSARTRRGAA AMQPAKAVAA EAASPAVEMG NGAAVAGMQR PDAMGRFGKF GGKYVPETLM
101: HALTELENAF HALATDEEFQ KELDGILKDY VGRESPLYFA ERLTEHYKRA DGTGPLIYLK REDLNHTGAH KINNAVAQAL LAKRLGKQRI IAETGAGQHG
201: VATATVCARF GLQCIIYMGA QDMERQALNV FRMRLLGAEV RAVHSGTATL KDATSEAIRD WVTNVETTHY ILGSVAGPHP YPMMVREFHK VIGKETRRQA
301: MDKWGGKPDV LVACVGGGSN AMGLFHEFVE DQDVRLIGVE AAGHGVDTDK HAATLTKGEV GVLHGSMSYL LQDDDGQVIE PHSISAGLDY PGVGPEHSFL
401: KDIGRAEYDS VTDQEALDAF KRVSRLEGII PALETSHALA YLEKLCPTLP DGVRVVVNCS GRGDKDVHTA SKYLDV

Best Arabidopsis Sequence Match ( AT5G54810.1 )
(BLAST)

001: MAASGTSATF RASVSSAPSS SSQLTHLKSP FKAVKYTPLP SSRSKSSSFS VSCTIAKDPP VLMAAGSDPA LWQRPDSFGR FGKFGGKYVP ETLMHALSEL
101: ESAFYALATD DDFQRELAGI LKDYVGRESP LYFAERLTEH YRRENGEGPL IYLKREDLNH TGAHKINNAV AQALLAKRLG KKRIIAETGA GQHGVATATV
201: CARFGLECII YMGAQDMERQ ALNVFRMRLL GAEVRGVHSG TATLKDATSE AIRDWVTNVE TTHYILGSVA GPHPYPMMVR DFHAVIGKET RKQALEKWGG
301: KPDVLVACVG GGSNAMGLFH EFVNDTEVRM IGVEAAGFGL DSGKHAATLT KGDVGVLHGA MSYLLQDDDG QIIEPHSISA GLDYPGVGPE HSFFKDMGRA
401: EYYSITDEEA LEAFKRVSRL EGIIPALETS HALAYLEKLC PTLSDGTRVV LNFSGRGDKD VQTVAKYLDV

Arabidopsis Description

TSB1Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.