Factsheet for HORVU7Hr1G073460.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G073460.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	HORVU7Hr1G073460.3	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G305300.1	Wheat	plastid	91.49	98.3
TraesCS7B01G208700.1	Wheat	plastid	91.29	98.09
TraesCS7A01G308600.1	Wheat	plastid	90.89	97.66
PGSC0003DMT400037303	Potato	cytosol	70.1	86.34
Zm00001d049610_P001	Maize	plastid	79.41	84.6
Os08t0135900-01	Rice	plastid	77.82	83.44
EES13315	Sorghum	plastid	78.61	83.4
Zm00001d024702_P001	Maize	plastid	77.43	81.63
CDX82609	Canola	cytosol	48.32	81.61
CDY55463	Canola	cytosol	48.32	81.61
GSMUA_Achr4P07140_001	Banana	mitochondrion	68.12	79.81
VIT_19s0177g00310.t01	Wine grape	plastid	70.5	77.73
CDY17275	Canola	plastid	71.49	77.63
CDY19860	Canola	plastid	71.49	77.63
Bra002954.1-P	Field mustard	plastid	71.49	77.63
PGSC0003DMT400002722	Potato	plastid	69.7	77.19
Solyc07g064280.2.1	Tomato	plastid	69.5	76.97
Solyc10g006400.2.1	Tomato	plastid	71.29	76.92
AT5G54810.1	Thale cress	plastid	70.69	75.96
CDY46668	Canola	plastid	70.69	75.64
Bra019075.1-P	Field mustard	plastid	70.69	75.64
CDX92783	Canola	plastid	70.5	75.42
AT4G27070.1	Thale cress	plastid	70.89	75.37
KRG98855	Soybean	mitochondrion, plastid	69.7	74.73
KRH37954	Soybean	cytosol	22.57	74.03
KRH46102	Soybean	nucleus, plastid	69.9	73.7
CDY53670	Canola	cytosol	15.45	66.1
CDY56040	Canola	plastid	32.48	53.77
HORVU7Hr1G092800.3	Barley	plastid	22.18	22.86
HORVU4Hr1G035330.1	Barley	plastid	5.74	21.32

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2	UniProt:A0A287WVK2	GO:GO:0000162
GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009987	GO:GO:0016829	EnsemblPlantsGene:HORVU7Hr1G073460
EnsemblPlants:HORVU7Hr1G073460.3	HAMAP:MF_00133	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882
PANTHER:PTHR42882:SF3	SUPFAM:SSF53686	TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000B4827D9	SEG:seg	:	:	:

Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:A0A287WVK2]

Coordinates

chrchr7H:+:416616848..416620128

Molecular Weight (calculated)

54250.9 Da

IEP (calculated)

8.055

GRAVY (calculated)

-0.238

Length

505 amino acids

Sequence
(BLAST)

001: CRYTSFTCPS SKPRGSIHQP RAKCSKATGL YTRRPMAASA IRNPSPAAAV SAPPPSRAVL RMLTPSARRG ASVVASASMR PVKAVAAEAP SPVSERVNGA
101: EVAGAGIARP DALGRFGKFG GKYVPETLMH ALTELEAAFH ALADDEDFQK ELDGILKDYV GRESPLYFAE RLTEHYKRAD GTGPLIYLKR EDLNHTGAHK
201: INNAVAQALL AKKLGKKRII AETGAGQHGV ATATVCARFG LECIIYMGAQ DMERQALNVF RMKLLGAEVR PVHSGTATLK DATSEAIRDW VTNVETTHYI
301: LGSVAGPHPY PMMVREFHKV IGKETRRQAM DKWGGKPDVL VACIGGGSNA MGLFHEFVDD QDVRLIGVEA AGHGVDTDKH AATLTKGEVG VLHGSLSYVL
401: QDADGQVIEP HSISAGLDYP GVGPEHSFLR DIGRAEYDSV TDQEALDAFK RTSRLEGIIP ALETSHALAY LEKLCPTLPD GVRVVLNCSG RGDKDVHTAS
501: KYLDV

Best Arabidopsis Sequence Match ( AT4G27070.1 )
(BLAST)

001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV

Arabidopsis Description

TSB2Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WS13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.