Factsheet for Bra019075.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92783	Canola	plastid	98.73	98.73
CDY46668	Canola	plastid	98.52	98.52
Bra002954.1-P	Field mustard	plastid	89.19	90.54
AT4G27070.1	Thale cress	plastid	89.62	89.05
Zm00001d049610_P001	Maize	plastid	77.12	76.79
EES13315	Sorghum	plastid	77.12	76.47
TraesCS7B01G208700.1	Wheat	plastid	76.06	76.38
TraesCS7A01G308600.1	Wheat	plastid	75.85	76.17
TraesCS7D01G305300.1	Wheat	plastid	75.85	76.17
Os08t0135900-01	Rice	plastid	75.85	76.01
Zm00001d024702_P001	Maize	plastid	76.69	75.57
Bra026381.1-P	Field mustard	cytosol	16.1	75.25
HORVU7Hr1G073460.3	Barley	plastid	75.64	70.69
Bra016829.1-P	Field mustard	plastid	55.3	56.25
Bra037230.1-P	Field mustard	plastid	51.69	55.33
Bra016830.1-P	Field mustard	plastid	50.64	52.88
Bra028413.1-P	Field mustard	plastid	23.73	22.4
Bra028191.1-P	Field mustard	plastid	23.31	22.0
Bra025430.1-P	Field mustard	plastid	22.25	21.26

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2	EnsemblPlantsGene:Bra019075	EnsemblPlants:Bra019075.1
EnsemblPlants:Bra019075.1-P	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941
GO:GO:0009987	GO:GO:0016829	UniProt:M4DRD2	HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413
InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	SUPFAM:SSF53686	TIGRFAMs:TIGR00263
InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0002541265	SEG:seg

Description

AT4G27070 (E=4e-255) TSB2 | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2); tryptophan synthase

Coordinates

chrA03:+:26448500..26450467

Molecular Weight (calculated)

51434.3 Da

IEP (calculated)

6.873

GRAVY (calculated)

-0.249

Length

472 amino acids

Sequence
(BLAST)

001: MATSGTASTF RPSVSASSRL THLRSPPSKV PLFTPLPSSR SRSFSVSCTI AKDPTFLMAE AENTKTAGSD PTLWKRPDSF GRFGKFGGKY VPETLMHALS
101: ELETAFYSLA TDDDFQRELA GILKDYVGRE SPLYFAERLT EHYRRENGEG PLIYLKREDL NHTGAHKINN AVAQALLAKR LGKKRIIAET GAGQHGVATA
201: TVCARFGLQC IIYMGAQDME RQALNVFRMR LLGAEVRGVH SGTATLKDAT SEAIRDWVTN VETTHYILGS VAGPHPYPMM VRDFHAVIGK ETRRQAMEKW
301: GGKPDVLVAC VGGGSNAMGL FHEFVDDTEV RMIGVEAAGF GLDSGKHAAT LTKGDVGVLH GAMSYLLQDD DGQIIEPHSI SAGLDYPGVG PEHSFLKDMG
401: RAEYYSVTDE EALEAFKRVS RLEGIIPALE TSHALAHLEK LCPTLPDGAR VVLNFSGRGD KDVQTAIKYL EV

Best Arabidopsis Sequence Match ( AT4G27070.1 )
(BLAST)

001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV

Arabidopsis Description

TSB2Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WS13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.