Factsheet for HORVU7Hr1G092800.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G093390.2
HORVU3Hr1G027650.2
HORVU3Hr1G054240.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38530.1	HORVU1Hr1G093390.2	AT2G42580.1	19000166
AT5G38530.1	HORVU3Hr1G027650.2	AT2G42580.1	19000166
AT5G38530.1	HORVU3Hr1G054240.2	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G392800.1	Wheat	plastid	93.27	93.84
TraesCS7D01G388400.3	Wheat	cytosol	93.06	92.49
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	90.61	91.17
Zm00001d046676_P001	Maize	extracellular	67.55	88.74
Os06t0632200-02	Rice	plastid	82.24	82.75
KXG20416	Sorghum	plastid	82.45	81.78
CDY63316	Canola	cytosol	60.61	76.94
GSMUA_Achr2P05390_001	Banana	plastid	74.9	73.25
CDX99679	Canola	cytosol	16.33	72.73
VIT_14s0083g00460.t01	Wine grape	plastid	72.65	71.92
PGSC0003DMT400075555	Potato	plastid	71.84	71.54
Solyc12g096190.1.1	Tomato	plastid	71.84	71.54
KRH18295	Soybean	nucleus, plastid	72.65	70.92
Bra028191.1-P	Field mustard	plastid	71.84	70.4
CDY01654	Canola	plastid	71.84	70.26
CDX74518	Canola	plastid	71.63	70.2
KRG93806	Soybean	cytosol	34.08	69.87
Bra028413.1-P	Field mustard	plastid	71.22	69.8
AT5G38530.1	Thale cress	plastid	71.84	69.57
CDY52465	Canola	plastid	70.0	68.6
CDX99680	Canola	plastid	70.0	68.6
CDY30314	Canola	plastid	66.33	68.13
CDX67409	Canola	plastid	66.33	68.13
CDY50576	Canola	plastid	66.12	67.92
Bra025430.1-P	Field mustard	plastid	68.37	67.81
HORVU7Hr1G073460.3	Barley	plastid	22.86	22.18
HORVU4Hr1G035330.1	Barley	plastid	3.88	13.97

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	UniProt:A0A287XCJ6	GO:GO:0000162
GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0005488	GO:GO:0006568	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030170	EnsemblPlantsGene:HORVU7Hr1G092800	EnsemblPlants:HORVU7Hr1G092800.3
HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413	PIRSF:PIRSF500824	InterPro:PLP-dep	PANTHER:PTHR43565
SUPFAM:SSF53686	TIGRFAMs:TIGR01415	InterPro:Trp_synth_b-like	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI000B484CA2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:+:568260183..568284907

Molecular Weight (calculated)

53272.0 Da

IEP (calculated)

6.828

GRAVY (calculated)

-0.170

Length

490 amino acids

Sequence
(BLAST)

001: MATASTALRP PRLPVAEQAS PLHRLPKNRV VAVNVRRSFA ARAGSYPGNV GVPKQWYNLI ADLPVKPPPM LHPGTHQPLN PSDLAPLFPD ELIRQELTEE
101: RFIDIPDEVR DVYELWRPTP LIRAKRLEKL LGTPAKIYYK YEGTSPAGSH KGNTAVPQAW YNAAAGVKNV VTETGAGQWG SALSFASTLF GLNCEVWQVR
201: ASYDQKPYRR LMMETWGAKV HPSPSDVTEA GRRLLAADPS SPGSLGMAIS EAVEVAATNA DTKYCLGSVL NHVLLHQTVI GEECLEQLAA IGDTPDVVIG
301: CTGGGSNFGG LAFPFMREKL AGRMNPQFKA VEPAACPTLT KGVYTYDYGD TAGLTPLMKM HTLGHDFVPD PIHAGGLRYH GMAPLISHVY ELGFMEAMSI
401: QQTECFEAAI QFARTEGIIP APEPTHAIAA AIREALECKR TGEEKVILIA MCGHGHFDLA AYDRYLRGDM IDLSHSSEKL KESLGAIPKV

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.