Factsheet for Solyc06g082510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g064280.2.1
Solyc10g006400.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15720.1	Solyc07g064280.2.1	AT5G54810.1	21798944
AT1G15720.1	Solyc10g006400.2.1	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078128	Potato	nucleus	81.37	81.9
VIT_06s0004g08050.t01	Wine grape	nucleus	39.4	38.41
KRH41741	Soybean	nucleus	10.28	36.92
KRH63009	Soybean	nucleus	28.91	30.82
KRH30478	Soybean	nucleus	30.62	30.49
CDY41924	Canola	nucleus	24.84	30.05
KRG98140	Soybean	nucleus	29.98	29.91
KRH54884	Soybean	nucleus	29.98	28.4
Bra039470.1-P	Field mustard	nucleus	23.55	27.92
CDY27805	Canola	nucleus	23.13	27.41
CDY43862	Canola	nucleus	23.13	26.93
AT1G15720.1	Thale cress	nucleus	22.27	26.67
EER98688	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	23.55	26.19
OQU93426	Sorghum	cytosol	19.7	25.77
TraesCS7A01G145200.1	Wheat	nucleus	22.91	25.66
TraesCS7B01G047400.1	Wheat	nucleus	22.7	25.42
CDY32992	Canola	nucleus	23.55	25.35
TraesCS7D01G146500.1	Wheat	nucleus	22.27	25.0
EER93019	Sorghum	nucleus	22.7	24.71
Zm00001d036356_P005	Maize	nucleus	22.7	24.37
AT5G58340.1	Thale cress	nucleus	23.34	24.33
Zm00001d045123_P001	Maize	nucleus	20.77	24.07
GSMUA_Achr4P27790_001	Banana	nucleus	14.35	24.01
Zm00001d007141_P003	Maize	nucleus	22.27	23.69
Bra002659.1-P	Field mustard	nucleus	21.84	23.56
GSMUA_Achr9P30360_001	Banana	nucleus	15.2	22.9
CDY32708	Canola	nucleus	3.64	22.67
Bra020373.1-P	Field mustard	nucleus	13.06	21.86
CDY32710	Canola	cytosol	2.78	20.31
Os06t0181300-01	Rice	nucleus	14.35	20.0
TraesCS2B01G094500.1	Wheat	plastid	15.85	19.58
Os07t0695900-01	Rice	nucleus	15.2	18.49
TraesCS2D01G077000.1	Wheat	nucleus	14.35	18.41
TraesCS2A01G079700.1	Wheat	plastid	14.56	18.04
HORVU2Hr1G013090.1	Barley	nucleus	14.35	17.68
OQU75965	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	23.55	16.42
EES15771	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	23.34	16.27
Zm00001d013827_P001	Maize	extracellular, nucleus	15.42	12.04
OQU91491	Sorghum	nucleus	12.42	9.86

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	GO:GO:0000783	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003691	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0031627	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K4CAB0	InterPro:Myb_dom	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF39	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
EnsemblPlantsGene:Solyc06g082510.2	EnsemblPlants:Solyc06g082510.2.1	UniParc:UPI00027659BF	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:48297244..48300094

Molecular Weight (calculated)

52600.5 Da

IEP (calculated)

8.771

GRAVY (calculated)

-0.571

Length

467 amino acids

Sequence
(BLAST)

001: MDIDTDISHW ILEFILRQPL DDSVLNGFIH VLPLPNDKPN LKKALLIRKI ESEISNGSVN EKILDFLELI EELNHQDGIE ASEVMKAAYC AVAVECTVKF
101: LNSEGTGGDK GKYFDAVRRI WKRKINLTEK IENVGFVSEE LWNWRDEIEA ALWDDKCSYS VIMKSKAVVA VESVKFFVRE AKERTGSPFL DVVAEAYQSD
201: ETMKTLFGGL NKEGARRENN REVSKGTALR RKKHVAFKRT REGVRINDSI ELELKASGGG GQDGLPSSAE IQKAEKALKL SSLELRAMVK DPLPEALRYA
301: ETLSHLARDN MGHQPAGNRS DRAPPPMYSS SRLFQASGDK CEAQHNFHQS AASKPDQVNQ NTTANPIELD DFLDKLTEGS PSPSKANRAT LPTPKTVRVS
401: PLKKYEYKKI TTRRKVTKWS SLEEETLRAG VQQYGIGNWK FILNTYPNIF SARTAVDLKD KWRNLIS

Best Arabidopsis Sequence Match ( AT5G58340.1 )
(BLAST)

001: MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q5XUY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.